miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18512 5' -59 NC_004681.1 + 40075 0.66 0.550713
Target:  5'- cACCCAGAucgacaGGCUGGAGaUCaUGUGUGAc -3'
miRNA:   3'- -UGGGUCU------UCGACCUCgAGgACGCGUU- -5'
18512 5' -59 NC_004681.1 + 3048 0.66 0.540188
Target:  5'- gGCgCCAaGGGcCUGGuGGCagUCCUGCGCAAg -3'
miRNA:   3'- -UG-GGUcUUC-GACC-UCG--AGGACGCGUU- -5'
18512 5' -59 NC_004681.1 + 67152 0.67 0.493764
Target:  5'- gACCCAGAGcgucagcguguugguGCUGGAGauggugccagugagCUUGCGCAu -3'
miRNA:   3'- -UGGGUCUU---------------CGACCUCga------------GGACGCGUu -5'
18512 5' -59 NC_004681.1 + 18253 0.68 0.393534
Target:  5'- cUCCAGGAGCUucaGGAGCggcaacUCCggGCGCGg -3'
miRNA:   3'- uGGGUCUUCGA---CCUCG------AGGa-CGCGUu -5'
18512 5' -59 NC_004681.1 + 61709 0.69 0.375982
Target:  5'- aACCCGccuGAAGCUGGAG-UCCgucCGCAAg -3'
miRNA:   3'- -UGGGU---CUUCGACCUCgAGGac-GCGUU- -5'
18512 5' -59 NC_004681.1 + 5845 0.69 0.367407
Target:  5'- aGCCCcGAGGCUcaGcAGCgCCUGCGCGAa -3'
miRNA:   3'- -UGGGuCUUCGA--CcUCGaGGACGCGUU- -5'
18512 5' -59 NC_004681.1 + 65878 0.69 0.350664
Target:  5'- gUCCAuGAAGCUGGAcuGgUCCUcGCGCAu -3'
miRNA:   3'- uGGGU-CUUCGACCU--CgAGGA-CGCGUu -5'
18512 5' -59 NC_004681.1 + 8989 0.7 0.311219
Target:  5'- -gCCAGGAGCUGGAcCUCUuccuUGCGCu- -3'
miRNA:   3'- ugGGUCUUCGACCUcGAGG----ACGCGuu -5'
18512 5' -59 NC_004681.1 + 9233 0.73 0.213363
Target:  5'- aACCCGc--GCgacugGGAGCUCCUGCGCc- -3'
miRNA:   3'- -UGGGUcuuCGa----CCUCGAGGACGCGuu -5'
18512 5' -59 NC_004681.1 + 5698 0.73 0.192158
Target:  5'- aACCCuGAcgGGCUGGAGCgcggCCUGuCGCu- -3'
miRNA:   3'- -UGGGuCU--UCGACCUCGa---GGAC-GCGuu -5'
18512 5' -59 NC_004681.1 + 16385 0.76 0.124868
Target:  5'- uGCCCucgGGGAGCUGGuAGC-CCUGCGCc- -3'
miRNA:   3'- -UGGG---UCUUCGACC-UCGaGGACGCGuu -5'
18512 5' -59 NC_004681.1 + 49491 0.76 0.121483
Target:  5'- uGCCCAGucGCcGGGG-UCCUGCGCAAc -3'
miRNA:   3'- -UGGGUCuuCGaCCUCgAGGACGCGUU- -5'
18512 5' -59 NC_004681.1 + 61811 1.05 0.000879
Target:  5'- cACCCAGAAGCUGGAGCUCCUGCGCAAc -3'
miRNA:   3'- -UGGGUCUUCGACCUCGAGGACGCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.