Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18513 | 3' | -61.5 | NC_004681.1 | + | 25525 | 0.66 | 0.523826 |
Target: 5'- cCGGaUCUACaccaccaacgUgGAUGCGGCCGgaUGGGAg -3' miRNA: 3'- -GCC-GGAUG----------AgCUGCGCCGGC--ACCCUg -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 30764 | 0.66 | 0.523826 |
Target: 5'- aGGCgaGCUUGAcCGCGGCgucCGcGGGAa -3' miRNA: 3'- gCCGgaUGAGCU-GCGCCG---GCaCCCUg -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 23753 | 0.66 | 0.513994 |
Target: 5'- aGGCCaGCUCGAUGgGcucacccggcucGCCGUcgucggcgaacGGGACc -3' miRNA: 3'- gCCGGaUGAGCUGCgC------------CGGCA-----------CCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 14684 | 0.66 | 0.513994 |
Target: 5'- aCGGCCUGCUUcaGCuCGGCCccacgGUGGGuuACa -3' miRNA: 3'- -GCCGGAUGAGc-UGcGCCGG-----CACCC--UG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 38329 | 0.66 | 0.504238 |
Target: 5'- gGuGCCUA--UGGCGCcGCCGcGGGACg -3' miRNA: 3'- gC-CGGAUgaGCUGCGcCGGCaCCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 16341 | 0.66 | 0.494562 |
Target: 5'- aGGCCauCUCcGCuGCGGCgGUGGGugGCg -3' miRNA: 3'- gCCGGauGAGcUG-CGCCGgCACCC--UG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 16701 | 0.66 | 0.475472 |
Target: 5'- gCGGCCUGCaguugcaggUCGAC-CGgggacGCCG-GGGGCu -3' miRNA: 3'- -GCCGGAUG---------AGCUGcGC-----CGGCaCCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 14818 | 0.67 | 0.456757 |
Target: 5'- aGGCUUccugcaACUcCGAgGCGGuguaacccaCCGUGGGGCc -3' miRNA: 3'- gCCGGA------UGA-GCUgCGCC---------GGCACCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 49441 | 0.67 | 0.456757 |
Target: 5'- uGGUCaGCgcccgCGGCGCcGCCGUGgcGGACg -3' miRNA: 3'- gCCGGaUGa----GCUGCGcCGGCAC--CCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 74682 | 0.67 | 0.447549 |
Target: 5'- uGGCUUAUgCGugGCGuaaGCUuUGGGACa -3' miRNA: 3'- gCCGGAUGaGCugCGC---CGGcACCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 74040 | 0.67 | 0.447549 |
Target: 5'- aGGaCUUGCUCG-CGCGGaugcuCCGUGGaGCg -3' miRNA: 3'- gCC-GGAUGAGCuGCGCC-----GGCACCcUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 3836 | 0.67 | 0.447548 |
Target: 5'- -uGCCUgGCaaGACgGCGGCaUGUGGGACu -3' miRNA: 3'- gcCGGA-UGagCUG-CGCCG-GCACCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 30902 | 0.67 | 0.438444 |
Target: 5'- aGGCCguggcguaggagUugUCGacagucaugGCGCGGCCGuUGGuGACc -3' miRNA: 3'- gCCGG------------AugAGC---------UGCGCCGGC-ACC-CUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 45051 | 0.67 | 0.437539 |
Target: 5'- gGGCCUgagcccgaGCUCgcgGugGCGGCuccaccgCGUGGGGg -3' miRNA: 3'- gCCGGA--------UGAG---CugCGCCG-------GCACCCUg -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 13344 | 0.67 | 0.429447 |
Target: 5'- uCGGCgaGCUUGACGCGGCgGUcGcGCu -3' miRNA: 3'- -GCCGgaUGAGCUGCGCCGgCAcCcUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 44261 | 0.67 | 0.429447 |
Target: 5'- gGcGCCguagcACUCGuauuCGCGGCCgGUGaGGGCc -3' miRNA: 3'- gC-CGGa----UGAGCu---GCGCCGG-CAC-CCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 33372 | 0.68 | 0.403121 |
Target: 5'- cCGGCCgcgUCG-CGCGcGCCGUGuGGCa -3' miRNA: 3'- -GCCGGaugAGCuGCGC-CGGCACcCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 50349 | 0.68 | 0.403121 |
Target: 5'- ---gCUGgUCGACaacCGGCUGUGGGACg -3' miRNA: 3'- gccgGAUgAGCUGc--GCCGGCACCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 39172 | 0.68 | 0.386149 |
Target: 5'- gGGCUUGCaCGGCGCGGUCGgacaGGuGCu -3' miRNA: 3'- gCCGGAUGaGCUGCGCCGGCa---CCcUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 30696 | 0.69 | 0.352863 |
Target: 5'- aCGGCC--CUgGugGCGGUgcgaacucccacaUGUGGGGCg -3' miRNA: 3'- -GCCGGauGAgCugCGCCG-------------GCACCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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