miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18513 3' -61.5 NC_004681.1 + 30902 0.67 0.438444
Target:  5'- aGGCCguggcguaggagUugUCGacagucaugGCGCGGCCGuUGGuGACc -3'
miRNA:   3'- gCCGG------------AugAGC---------UGCGCCGGC-ACC-CUG- -5'
18513 3' -61.5 NC_004681.1 + 45051 0.67 0.437539
Target:  5'- gGGCCUgagcccgaGCUCgcgGugGCGGCuccaccgCGUGGGGg -3'
miRNA:   3'- gCCGGA--------UGAG---CugCGCCG-------GCACCCUg -5'
18513 3' -61.5 NC_004681.1 + 44261 0.67 0.429447
Target:  5'- gGcGCCguagcACUCGuauuCGCGGCCgGUGaGGGCc -3'
miRNA:   3'- gC-CGGa----UGAGCu---GCGCCGG-CAC-CCUG- -5'
18513 3' -61.5 NC_004681.1 + 13344 0.67 0.429447
Target:  5'- uCGGCgaGCUUGACGCGGCgGUcGcGCu -3'
miRNA:   3'- -GCCGgaUGAGCUGCGCCGgCAcCcUG- -5'
18513 3' -61.5 NC_004681.1 + 25525 0.66 0.523826
Target:  5'- cCGGaUCUACaccaccaacgUgGAUGCGGCCGgaUGGGAg -3'
miRNA:   3'- -GCC-GGAUG----------AgCUGCGCCGGC--ACCCUg -5'
18513 3' -61.5 NC_004681.1 + 14684 0.66 0.513994
Target:  5'- aCGGCCUGCUUcaGCuCGGCCccacgGUGGGuuACa -3'
miRNA:   3'- -GCCGGAUGAGc-UGcGCCGG-----CACCC--UG- -5'
18513 3' -61.5 NC_004681.1 + 16341 0.66 0.494562
Target:  5'- aGGCCauCUCcGCuGCGGCgGUGGGugGCg -3'
miRNA:   3'- gCCGGauGAGcUG-CGCCGgCACCC--UG- -5'
18513 3' -61.5 NC_004681.1 + 16701 0.66 0.475472
Target:  5'- gCGGCCUGCaguugcaggUCGAC-CGgggacGCCG-GGGGCu -3'
miRNA:   3'- -GCCGGAUG---------AGCUGcGC-----CGGCaCCCUG- -5'
18513 3' -61.5 NC_004681.1 + 38329 0.66 0.504238
Target:  5'- gGuGCCUA--UGGCGCcGCCGcGGGACg -3'
miRNA:   3'- gC-CGGAUgaGCUGCGcCGGCaCCCUG- -5'
18513 3' -61.5 NC_004681.1 + 23753 0.66 0.513994
Target:  5'- aGGCCaGCUCGAUGgGcucacccggcucGCCGUcgucggcgaacGGGACc -3'
miRNA:   3'- gCCGGaUGAGCUGCgC------------CGGCA-----------CCCUG- -5'
18513 3' -61.5 NC_004681.1 + 30764 0.66 0.523826
Target:  5'- aGGCgaGCUUGAcCGCGGCgucCGcGGGAa -3'
miRNA:   3'- gCCGgaUGAGCU-GCGCCG---GCaCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.