Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18513 | 3' | -61.5 | NC_004681.1 | + | 62009 | 1.09 | 0.000405 |
Target: 5'- gCGGCCUACUCGACGCGGCCGUGGGACa -3' miRNA: 3'- -GCCGGAUGAGCUGCGCCGGCACCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 16421 | 0.77 | 0.094531 |
Target: 5'- uGGCCUGCUCGGCuuccgucgaucCGGCCGcgGGGAUg -3' miRNA: 3'- gCCGGAUGAGCUGc----------GCCGGCa-CCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 2567 | 0.73 | 0.195136 |
Target: 5'- uCGGagUAUUCGACGCGGCCGaagagUGGG-Cg -3' miRNA: 3'- -GCCggAUGAGCUGCGCCGGC-----ACCCuG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 14670 | 0.71 | 0.249514 |
Target: 5'- gGuGCCgaaggCGACuGCGGCCGUGGuGGCg -3' miRNA: 3'- gC-CGGauga-GCUG-CGCCGGCACC-CUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 2443 | 0.71 | 0.255592 |
Target: 5'- gGGCCUugUUGgcGCGCGGCacgcagaaGUGGG-Cg -3' miRNA: 3'- gCCGGAugAGC--UGCGCCGg-------CACCCuG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 58753 | 0.7 | 0.274552 |
Target: 5'- uGGCCcGCggCGcAgGCGGCCGUGGcGCa -3' miRNA: 3'- gCCGGaUGa-GC-UgCGCCGGCACCcUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 30139 | 0.7 | 0.287807 |
Target: 5'- gCGGCCUgugggucggGCUcaggCGGCGCGGCCGcggaGuGGACc -3' miRNA: 3'- -GCCGGA---------UGA----GCUGCGCCGGCa---C-CCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 31061 | 0.7 | 0.294621 |
Target: 5'- uGGUCUACUucgUGugGCGGCCGaacuggcaGGACg -3' miRNA: 3'- gCCGGAUGA---GCugCGCCGGCac------CCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 15771 | 0.7 | 0.301561 |
Target: 5'- aGGCgUGCUCGACGUcGCCGUuGG-Cg -3' miRNA: 3'- gCCGgAUGAGCUGCGcCGGCAcCCuG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 23163 | 0.69 | 0.330574 |
Target: 5'- uGGuCCUGCgcgCGAuUGCGGgCG-GGGACg -3' miRNA: 3'- gCC-GGAUGa--GCU-GCGCCgGCaCCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 27926 | 0.69 | 0.338141 |
Target: 5'- gGGCCUcgGCggcaCGGCaCGGCUGUGGG-Ca -3' miRNA: 3'- gCCGGA--UGa---GCUGcGCCGGCACCCuG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 30696 | 0.69 | 0.352863 |
Target: 5'- aCGGCC--CUgGugGCGGUgcgaacucccacaUGUGGGGCg -3' miRNA: 3'- -GCCGGauGAgCugCGCCG-------------GCACCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 39172 | 0.68 | 0.386149 |
Target: 5'- gGGCUUGCaCGGCGCGGUCGgacaGGuGCu -3' miRNA: 3'- gCCGGAUGaGCUGCGCCGGCa---CCcUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 50349 | 0.68 | 0.403121 |
Target: 5'- ---gCUGgUCGACaacCGGCUGUGGGACg -3' miRNA: 3'- gccgGAUgAGCUGc--GCCGGCACCCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 33372 | 0.68 | 0.403121 |
Target: 5'- cCGGCCgcgUCG-CGCGcGCCGUGuGGCa -3' miRNA: 3'- -GCCGGaugAGCuGCGC-CGGCACcCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 13344 | 0.67 | 0.429447 |
Target: 5'- uCGGCgaGCUUGACGCGGCgGUcGcGCu -3' miRNA: 3'- -GCCGgaUGAGCUGCGCCGgCAcCcUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 44261 | 0.67 | 0.429447 |
Target: 5'- gGcGCCguagcACUCGuauuCGCGGCCgGUGaGGGCc -3' miRNA: 3'- gC-CGGa----UGAGCu---GCGCCGG-CAC-CCUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 45051 | 0.67 | 0.437539 |
Target: 5'- gGGCCUgagcccgaGCUCgcgGugGCGGCuccaccgCGUGGGGg -3' miRNA: 3'- gCCGGA--------UGAG---CugCGCCG-------GCACCCUg -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 30902 | 0.67 | 0.438444 |
Target: 5'- aGGCCguggcguaggagUugUCGacagucaugGCGCGGCCGuUGGuGACc -3' miRNA: 3'- gCCGG------------AugAGC---------UGCGCCGGC-ACC-CUG- -5' |
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18513 | 3' | -61.5 | NC_004681.1 | + | 3836 | 0.67 | 0.447548 |
Target: 5'- -uGCCUgGCaaGACgGCGGCaUGUGGGACu -3' miRNA: 3'- gcCGGA-UGagCUG-CGCCG-GCACCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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