miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18513 3' -61.5 NC_004681.1 + 27926 0.69 0.338141
Target:  5'- gGGCCUcgGCggcaCGGCaCGGCUGUGGG-Ca -3'
miRNA:   3'- gCCGGA--UGa---GCUGcGCCGGCACCCuG- -5'
18513 3' -61.5 NC_004681.1 + 23163 0.69 0.330574
Target:  5'- uGGuCCUGCgcgCGAuUGCGGgCG-GGGACg -3'
miRNA:   3'- gCC-GGAUGa--GCU-GCGCCgGCaCCCUG- -5'
18513 3' -61.5 NC_004681.1 + 15771 0.7 0.301561
Target:  5'- aGGCgUGCUCGACGUcGCCGUuGG-Cg -3'
miRNA:   3'- gCCGgAUGAGCUGCGcCGGCAcCCuG- -5'
18513 3' -61.5 NC_004681.1 + 31061 0.7 0.294621
Target:  5'- uGGUCUACUucgUGugGCGGCCGaacuggcaGGACg -3'
miRNA:   3'- gCCGGAUGA---GCugCGCCGGCac------CCUG- -5'
18513 3' -61.5 NC_004681.1 + 30139 0.7 0.287807
Target:  5'- gCGGCCUgugggucggGCUcaggCGGCGCGGCCGcggaGuGGACc -3'
miRNA:   3'- -GCCGGA---------UGA----GCUGCGCCGGCa---C-CCUG- -5'
18513 3' -61.5 NC_004681.1 + 58753 0.7 0.274552
Target:  5'- uGGCCcGCggCGcAgGCGGCCGUGGcGCa -3'
miRNA:   3'- gCCGGaUGa-GC-UgCGCCGGCACCcUG- -5'
18513 3' -61.5 NC_004681.1 + 2443 0.71 0.255592
Target:  5'- gGGCCUugUUGgcGCGCGGCacgcagaaGUGGG-Cg -3'
miRNA:   3'- gCCGGAugAGC--UGCGCCGg-------CACCCuG- -5'
18513 3' -61.5 NC_004681.1 + 14670 0.71 0.249514
Target:  5'- gGuGCCgaaggCGACuGCGGCCGUGGuGGCg -3'
miRNA:   3'- gC-CGGauga-GCUG-CGCCGGCACC-CUG- -5'
18513 3' -61.5 NC_004681.1 + 2567 0.73 0.195136
Target:  5'- uCGGagUAUUCGACGCGGCCGaagagUGGG-Cg -3'
miRNA:   3'- -GCCggAUGAGCUGCGCCGGC-----ACCCuG- -5'
18513 3' -61.5 NC_004681.1 + 16421 0.77 0.094531
Target:  5'- uGGCCUGCUCGGCuuccgucgaucCGGCCGcgGGGAUg -3'
miRNA:   3'- gCCGGAUGAGCUGc----------GCCGGCa-CCCUG- -5'
18513 3' -61.5 NC_004681.1 + 62009 1.09 0.000405
Target:  5'- gCGGCCUACUCGACGCGGCCGUGGGACa -3'
miRNA:   3'- -GCCGGAUGAGCUGCGCCGGCACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.