miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18513 3' -61.5 NC_004681.1 + 33372 0.68 0.403121
Target:  5'- cCGGCCgcgUCG-CGCGcGCCGUGuGGCa -3'
miRNA:   3'- -GCCGGaugAGCuGCGC-CGGCACcCUG- -5'
18513 3' -61.5 NC_004681.1 + 38329 0.66 0.504238
Target:  5'- gGuGCCUA--UGGCGCcGCCGcGGGACg -3'
miRNA:   3'- gC-CGGAUgaGCUGCGcCGGCaCCCUG- -5'
18513 3' -61.5 NC_004681.1 + 39172 0.68 0.386149
Target:  5'- gGGCUUGCaCGGCGCGGUCGgacaGGuGCu -3'
miRNA:   3'- gCCGGAUGaGCUGCGCCGGCa---CCcUG- -5'
18513 3' -61.5 NC_004681.1 + 44261 0.67 0.429447
Target:  5'- gGcGCCguagcACUCGuauuCGCGGCCgGUGaGGGCc -3'
miRNA:   3'- gC-CGGa----UGAGCu---GCGCCGG-CAC-CCUG- -5'
18513 3' -61.5 NC_004681.1 + 45051 0.67 0.437539
Target:  5'- gGGCCUgagcccgaGCUCgcgGugGCGGCuccaccgCGUGGGGg -3'
miRNA:   3'- gCCGGA--------UGAG---CugCGCCG-------GCACCCUg -5'
18513 3' -61.5 NC_004681.1 + 49441 0.67 0.456757
Target:  5'- uGGUCaGCgcccgCGGCGCcGCCGUGgcGGACg -3'
miRNA:   3'- gCCGGaUGa----GCUGCGcCGGCAC--CCUG- -5'
18513 3' -61.5 NC_004681.1 + 50349 0.68 0.403121
Target:  5'- ---gCUGgUCGACaacCGGCUGUGGGACg -3'
miRNA:   3'- gccgGAUgAGCUGc--GCCGGCACCCUG- -5'
18513 3' -61.5 NC_004681.1 + 58753 0.7 0.274552
Target:  5'- uGGCCcGCggCGcAgGCGGCCGUGGcGCa -3'
miRNA:   3'- gCCGGaUGa-GC-UgCGCCGGCACCcUG- -5'
18513 3' -61.5 NC_004681.1 + 62009 1.09 0.000405
Target:  5'- gCGGCCUACUCGACGCGGCCGUGGGACa -3'
miRNA:   3'- -GCCGGAUGAGCUGCGCCGGCACCCUG- -5'
18513 3' -61.5 NC_004681.1 + 74040 0.67 0.447549
Target:  5'- aGGaCUUGCUCG-CGCGGaugcuCCGUGGaGCg -3'
miRNA:   3'- gCC-GGAUGAGCuGCGCC-----GGCACCcUG- -5'
18513 3' -61.5 NC_004681.1 + 74682 0.67 0.447549
Target:  5'- uGGCUUAUgCGugGCGuaaGCUuUGGGACa -3'
miRNA:   3'- gCCGGAUGaGCugCGC---CGGcACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.