miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18513 3' -61.5 NC_004681.1 + 30139 0.7 0.287807
Target:  5'- gCGGCCUgugggucggGCUcaggCGGCGCGGCCGcggaGuGGACc -3'
miRNA:   3'- -GCCGGA---------UGA----GCUGCGCCGGCa---C-CCUG- -5'
18513 3' -61.5 NC_004681.1 + 31061 0.7 0.294621
Target:  5'- uGGUCUACUucgUGugGCGGCCGaacuggcaGGACg -3'
miRNA:   3'- gCCGGAUGA---GCugCGCCGGCac------CCUG- -5'
18513 3' -61.5 NC_004681.1 + 27926 0.69 0.338141
Target:  5'- gGGCCUcgGCggcaCGGCaCGGCUGUGGG-Ca -3'
miRNA:   3'- gCCGGA--UGa---GCUGcGCCGGCACCCuG- -5'
18513 3' -61.5 NC_004681.1 + 30696 0.69 0.352863
Target:  5'- aCGGCC--CUgGugGCGGUgcgaacucccacaUGUGGGGCg -3'
miRNA:   3'- -GCCGGauGAgCugCGCCG-------------GCACCCUG- -5'
18513 3' -61.5 NC_004681.1 + 50349 0.68 0.403121
Target:  5'- ---gCUGgUCGACaacCGGCUGUGGGACg -3'
miRNA:   3'- gccgGAUgAGCUGc--GCCGGCACCCUG- -5'
18513 3' -61.5 NC_004681.1 + 33372 0.68 0.403121
Target:  5'- cCGGCCgcgUCG-CGCGcGCCGUGuGGCa -3'
miRNA:   3'- -GCCGGaugAGCuGCGC-CGGCACcCUG- -5'
18513 3' -61.5 NC_004681.1 + 3836 0.67 0.447548
Target:  5'- -uGCCUgGCaaGACgGCGGCaUGUGGGACu -3'
miRNA:   3'- gcCGGA-UGagCUG-CGCCG-GCACCCUG- -5'
18513 3' -61.5 NC_004681.1 + 16341 0.66 0.494562
Target:  5'- aGGCCauCUCcGCuGCGGCgGUGGGugGCg -3'
miRNA:   3'- gCCGGauGAGcUG-CGCCGgCACCC--UG- -5'
18513 3' -61.5 NC_004681.1 + 14684 0.66 0.513994
Target:  5'- aCGGCCUGCUUcaGCuCGGCCccacgGUGGGuuACa -3'
miRNA:   3'- -GCCGGAUGAGc-UGcGCCGG-----CACCC--UG- -5'
18513 3' -61.5 NC_004681.1 + 25525 0.66 0.523826
Target:  5'- cCGGaUCUACaccaccaacgUgGAUGCGGCCGgaUGGGAg -3'
miRNA:   3'- -GCC-GGAUG----------AgCUGCGCCGGC--ACCCUg -5'
18513 3' -61.5 NC_004681.1 + 62009 1.09 0.000405
Target:  5'- gCGGCCUACUCGACGCGGCCGUGGGACa -3'
miRNA:   3'- -GCCGGAUGAGCUGCGCCGGCACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.