miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18513 5' -56.4 NC_004681.1 + 49556 0.66 0.767002
Target:  5'- gCCGUCCUuguagcGGGGGCcguggaaGCACu-GGCCGg -3'
miRNA:   3'- -GGCAGGG------UUCCCGug-----CGUGuuCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 43910 0.66 0.767002
Target:  5'- gCCGUagCGGGGGUggGCGC-GGACCu -3'
miRNA:   3'- -GGCAggGUUCCCGugCGUGuUCUGGu -5'
18513 5' -56.4 NC_004681.1 + 70769 0.66 0.767002
Target:  5'- aCCGUCUgAGGGuuagaGCcCGCACGGGAUa- -3'
miRNA:   3'- -GGCAGGgUUCC-----CGuGCGUGUUCUGgu -5'
18513 5' -56.4 NC_004681.1 + 13883 0.66 0.757111
Target:  5'- -gGUCCCcGGaugaGUACGCACAGGccGCCAc -3'
miRNA:   3'- ggCAGGGuUCc---CGUGCGUGUUC--UGGU- -5'
18513 5' -56.4 NC_004681.1 + 28767 0.66 0.7471
Target:  5'- gCG-CCCGcGGGUGCGUugA-GACCGa -3'
miRNA:   3'- gGCaGGGUuCCCGUGCGugUuCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 6448 0.66 0.741041
Target:  5'- gCG-CCCAAGGGCugcagcgcggaguucGCGUACAAcucgucGGCCu -3'
miRNA:   3'- gGCaGGGUUCCCG---------------UGCGUGUU------CUGGu -5'
18513 5' -56.4 NC_004681.1 + 60464 0.66 0.726761
Target:  5'- aCCGUgCCCAcgAGaGGCuuACGCGCA--ACCAc -3'
miRNA:   3'- -GGCA-GGGU--UC-CCG--UGCGUGUucUGGU- -5'
18513 5' -56.4 NC_004681.1 + 52979 0.67 0.716454
Target:  5'- uUGUCgCCGcggcucGGGCACGCGgGcAGGCCGa -3'
miRNA:   3'- gGCAG-GGUu-----CCCGUGCGUgU-UCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 41925 0.67 0.706069
Target:  5'- cCUGUCCCGAGca-GCGCuGCAAGACg- -3'
miRNA:   3'- -GGCAGGGUUCccgUGCG-UGUUCUGgu -5'
18513 5' -56.4 NC_004681.1 + 16092 0.67 0.706069
Target:  5'- gCGUCaCCAccgcGGCGCGCACAGccGCCAc -3'
miRNA:   3'- gGCAG-GGUuc--CCGUGCGUGUUc-UGGU- -5'
18513 5' -56.4 NC_004681.1 + 70243 0.67 0.706069
Target:  5'- aCCGUCCCAccacacuuGGcucGCGCGCACuguggcacggAGGACUg -3'
miRNA:   3'- -GGCAGGGUu-------CC---CGUGCGUG----------UUCUGGu -5'
18513 5' -56.4 NC_004681.1 + 22707 0.67 0.695616
Target:  5'- gUGUCCguGgagaaggagguGGGCACGUACA-GGCCGu -3'
miRNA:   3'- gGCAGGguU-----------CCCGUGCGUGUuCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 47927 0.67 0.695616
Target:  5'- aUGUCUUcGGGGCACGCggugACGAGcauccACCAg -3'
miRNA:   3'- gGCAGGGuUCCCGUGCG----UGUUC-----UGGU- -5'
18513 5' -56.4 NC_004681.1 + 65995 0.67 0.695616
Target:  5'- gUCG-CCCAGGauCAUGCGCGAgGACCAg -3'
miRNA:   3'- -GGCaGGGUUCccGUGCGUGUU-CUGGU- -5'
18513 5' -56.4 NC_004681.1 + 12386 0.67 0.695616
Target:  5'- uCCGUgCCGAGGGUugcCACAGGGgCGa -3'
miRNA:   3'- -GGCAgGGUUCCCGugcGUGUUCUgGU- -5'
18513 5' -56.4 NC_004681.1 + 42129 0.67 0.685105
Target:  5'- aCUG-CUCAGGuuGGCGCGCACGAGGuuGg -3'
miRNA:   3'- -GGCaGGGUUC--CCGUGCGUGUUCUggU- -5'
18513 5' -56.4 NC_004681.1 + 18729 0.67 0.685105
Target:  5'- --aUCgCCAAGGGCGacgGCGgCGAGGCCGc -3'
miRNA:   3'- ggcAG-GGUUCCCGUg--CGU-GUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 48246 0.67 0.674547
Target:  5'- gCCaGUCCgAuacGGGCACGCGgGcuGACCGa -3'
miRNA:   3'- -GG-CAGGgUu--CCCGUGCGUgUu-CUGGU- -5'
18513 5' -56.4 NC_004681.1 + 42771 0.67 0.674547
Target:  5'- uUGUUggCCAAGGGcUugGCGguGGACCAc -3'
miRNA:   3'- gGCAG--GGUUCCC-GugCGUguUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 7743 0.67 0.663951
Target:  5'- -gGUcCCCGAGGGCgaagaccuugaaGCGUuCAAGGCCc -3'
miRNA:   3'- ggCA-GGGUUCCCG------------UGCGuGUUCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.