miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18513 5' -56.4 NC_004681.1 + 62043 1.1 0.000987
Target:  5'- aCCGUCCCAAGGGCACGCACAAGACCAc -3'
miRNA:   3'- -GGCAGGGUUCCCGUGCGUGUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 17403 0.79 0.148972
Target:  5'- gCGUCCCGcGGGCACGCGC---GCCAg -3'
miRNA:   3'- gGCAGGGUuCCCGUGCGUGuucUGGU- -5'
18513 5' -56.4 NC_004681.1 + 56025 0.75 0.26946
Target:  5'- -aGUUCCAGgguggcGGGCACGCGCAcGACCu -3'
miRNA:   3'- ggCAGGGUU------CCCGUGCGUGUuCUGGu -5'
18513 5' -56.4 NC_004681.1 + 23778 0.74 0.31171
Target:  5'- aUGUCCgCGGaggcGGGCGCGUAgGAGGCCAg -3'
miRNA:   3'- gGCAGG-GUU----CCCGUGCGUgUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 61728 0.72 0.392858
Target:  5'- uCCGUCCgCAAGGaggccgcccucGCGCGCcACcAGACCGc -3'
miRNA:   3'- -GGCAGG-GUUCC-----------CGUGCG-UGuUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 49275 0.72 0.419739
Target:  5'- aUCGUCCaCGAGGaGCucuacaccgagGCGCGCAAGGCgGg -3'
miRNA:   3'- -GGCAGG-GUUCC-CG-----------UGCGUGUUCUGgU- -5'
18513 5' -56.4 NC_004681.1 + 18307 0.71 0.445807
Target:  5'- cCCGguacaCCCGGGGGUGCGCcgggaggcgcucCAGGACCGc -3'
miRNA:   3'- -GGCa----GGGUUCCCGUGCGu-----------GUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 48890 0.71 0.447704
Target:  5'- cCUGUCUCAcgucacgcGGGCAccguccCGUACAAGACCAu -3'
miRNA:   3'- -GGCAGGGUu-------CCCGU------GCGUGUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 23058 0.71 0.457253
Target:  5'- aCGUCCCcgcccGCaaucGCGCGCAGGACCAg -3'
miRNA:   3'- gGCAGGGuucc-CG----UGCGUGUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 14482 0.71 0.466911
Target:  5'- uCCG-CCgAgcAGGGCGCGCugGuGGCCGg -3'
miRNA:   3'- -GGCaGGgU--UCCCGUGCGugUuCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 29264 0.71 0.466911
Target:  5'- gCCG-CCCAGGGGUugGUcguugACGuGGCCGu -3'
miRNA:   3'- -GGCaGGGUUCCCGugCG-----UGUuCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 33332 0.71 0.476672
Target:  5'- gCCGUCC--AGGGCAcccgccCGCACAucacgcuggcugAGACCGg -3'
miRNA:   3'- -GGCAGGguUCCCGU------GCGUGU------------UCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 4177 0.7 0.486534
Target:  5'- gCGaCCCAgcgcGGGGUugGCGUggGGCCAg -3'
miRNA:   3'- gGCaGGGU----UCCCGugCGUGuuCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 11976 0.7 0.50654
Target:  5'- -aGUCCCcuccguGGGCAcCGCuggcuACAAGGCCAc -3'
miRNA:   3'- ggCAGGGuu----CCCGU-GCG-----UGUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 37196 0.7 0.516674
Target:  5'- gUCGUCCuCGAcGGCGCGCACGuAGAUg- -3'
miRNA:   3'- -GGCAGG-GUUcCCGUGCGUGU-UCUGgu -5'
18513 5' -56.4 NC_004681.1 + 42421 0.7 0.526888
Target:  5'- cCCGUCUCGucGGCGCGCagccuGCAcGACCc -3'
miRNA:   3'- -GGCAGGGUucCCGUGCG-----UGUuCUGGu -5'
18513 5' -56.4 NC_004681.1 + 47160 0.7 0.537178
Target:  5'- gCGUUCCuggcGGGGUGCGCGCucGugCAc -3'
miRNA:   3'- gGCAGGGu---UCCCGUGCGUGuuCugGU- -5'
18513 5' -56.4 NC_004681.1 + 14819 0.69 0.568431
Target:  5'- cCCGUaCCGAGGGCGUGgGCcuggaaGAGGCCAu -3'
miRNA:   3'- -GGCAgGGUUCCCGUGCgUG------UUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 67394 0.69 0.568431
Target:  5'- aCGUCgCUcAGGGCAaGCcCAAGGCCGu -3'
miRNA:   3'- gGCAG-GGuUCCCGUgCGuGUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 4466 0.69 0.568431
Target:  5'- uUCGUCCCcGGaGGCugGUugAAGGUCAc -3'
miRNA:   3'- -GGCAGGGuUC-CCGugCGugUUCUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.