miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18513 5' -56.4 NC_004681.1 + 67062 0.68 0.652265
Target:  5'- aCUGUCCCcgaugucgccuucGAGcucGGCGCGCGgcacCAGGGCCGc -3'
miRNA:   3'- -GGCAGGG-------------UUC---CCGUGCGU----GUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 61974 0.68 0.642687
Target:  5'- gCGUCaUCGcGGGCAUGCACcuguucGACCAg -3'
miRNA:   3'- gGCAG-GGUuCCCGUGCGUGuu----CUGGU- -5'
18513 5' -56.4 NC_004681.1 + 27905 0.68 0.642687
Target:  5'- cUCGUCCaguAGcGGCACGCG--GGGCCu -3'
miRNA:   3'- -GGCAGGgu-UC-CCGUGCGUguUCUGGu -5'
18513 5' -56.4 NC_004681.1 + 38228 0.68 0.642687
Target:  5'- aCGUCCCGcGGcGGCGC-CAUAGGcACCGu -3'
miRNA:   3'- gGCAGGGU-UC-CCGUGcGUGUUC-UGGU- -5'
18513 5' -56.4 NC_004681.1 + 59184 0.68 0.621385
Target:  5'- gCGUCUgGGGGGUGCGCugAuAGGCa- -3'
miRNA:   3'- gGCAGGgUUCCCGUGCGugU-UCUGgu -5'
18513 5' -56.4 NC_004681.1 + 16562 0.68 0.618191
Target:  5'- -aGUCCguGGGGggcuggaacgccacCACGC-CGAGACCAc -3'
miRNA:   3'- ggCAGGguUCCC--------------GUGCGuGUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 19474 0.68 0.610743
Target:  5'- -aGUUCCAAGGGCACcCGCuacGugCAu -3'
miRNA:   3'- ggCAGGGUUCCCGUGcGUGuu-CugGU- -5'
18513 5' -56.4 NC_004681.1 + 31731 0.68 0.610743
Target:  5'- cCUGUCCgAAGuGGCAgGCGCc-GACCc -3'
miRNA:   3'- -GGCAGGgUUC-CCGUgCGUGuuCUGGu -5'
18513 5' -56.4 NC_004681.1 + 46123 0.68 0.600119
Target:  5'- aCCGggcacuaCCAAGGGguaAUGCACGAGgACCGc -3'
miRNA:   3'- -GGCag-----GGUUCCCg--UGCGUGUUC-UGGU- -5'
18513 5' -56.4 NC_004681.1 + 41081 0.68 0.600119
Target:  5'- aCGUCCaCAAGGaGCucgGCGagguCAAGGCCAu -3'
miRNA:   3'- gGCAGG-GUUCC-CG---UGCgu--GUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 25061 0.68 0.599058
Target:  5'- cCCGUCgCCGGGGGUgaacuggAUGaUGCGGGGCCGu -3'
miRNA:   3'- -GGCAG-GGUUCCCG-------UGC-GUGUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 4466 0.69 0.568431
Target:  5'- uUCGUCCCcGGaGGCugGUugAAGGUCAc -3'
miRNA:   3'- -GGCAGGGuUC-CCGugCGugUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 67394 0.69 0.568431
Target:  5'- aCGUCgCUcAGGGCAaGCcCAAGGCCGu -3'
miRNA:   3'- gGCAG-GGuUCCCGUgCGuGUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 14819 0.69 0.568431
Target:  5'- cCCGUaCCGAGGGCGUGgGCcuggaaGAGGCCAu -3'
miRNA:   3'- -GGCAgGGUUCCCGUGCgUG------UUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 47160 0.7 0.537178
Target:  5'- gCGUUCCuggcGGGGUGCGCGCucGugCAc -3'
miRNA:   3'- gGCAGGGu---UCCCGUGCGUGuuCugGU- -5'
18513 5' -56.4 NC_004681.1 + 42421 0.7 0.526888
Target:  5'- cCCGUCUCGucGGCGCGCagccuGCAcGACCc -3'
miRNA:   3'- -GGCAGGGUucCCGUGCG-----UGUuCUGGu -5'
18513 5' -56.4 NC_004681.1 + 37196 0.7 0.516674
Target:  5'- gUCGUCCuCGAcGGCGCGCACGuAGAUg- -3'
miRNA:   3'- -GGCAGG-GUUcCCGUGCGUGU-UCUGgu -5'
18513 5' -56.4 NC_004681.1 + 11976 0.7 0.50654
Target:  5'- -aGUCCCcuccguGGGCAcCGCuggcuACAAGGCCAc -3'
miRNA:   3'- ggCAGGGuu----CCCGU-GCG-----UGUUCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 4177 0.7 0.486534
Target:  5'- gCGaCCCAgcgcGGGGUugGCGUggGGCCAg -3'
miRNA:   3'- gGCaGGGU----UCCCGugCGUGuuCUGGU- -5'
18513 5' -56.4 NC_004681.1 + 33332 0.71 0.476672
Target:  5'- gCCGUCC--AGGGCAcccgccCGCACAucacgcuggcugAGACCGg -3'
miRNA:   3'- -GGCAGGguUCCCGU------GCGUGU------------UCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.