miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18514 3' -60.5 NC_004681.1 + 18069 0.66 0.533991
Target:  5'- gGAGUGGCCGcauGGGcuGCGgGGCCCaC-CGg -3'
miRNA:   3'- -CUUACCGGCu--CCC--CGUgCUGGG-GuGC- -5'
18514 3' -60.5 NC_004681.1 + 16268 0.66 0.533991
Target:  5'- aGAUGGCCGAGGacaGCGCGAUgagCgACGg -3'
miRNA:   3'- cUUACCGGCUCCc--CGUGCUGg--GgUGC- -5'
18514 3' -60.5 NC_004681.1 + 39735 0.66 0.533991
Target:  5'- gGggUGGCUcuucauugcacuGAGGaucaGCAUGACCCC-CGa -3'
miRNA:   3'- -CuuACCGG------------CUCCc---CGUGCUGGGGuGC- -5'
18514 3' -60.5 NC_004681.1 + 68540 0.66 0.532986
Target:  5'- cGGUGGuucuccCCGAGGGGCAgGACUacuugcuggcacgCCugGa -3'
miRNA:   3'- cUUACC------GGCUCCCCGUgCUGG-------------GGugC- -5'
18514 3' -60.5 NC_004681.1 + 50386 0.66 0.523977
Target:  5'- ---cGGCCGcGGGGaCGUGGCCCUucuuGCGg -3'
miRNA:   3'- cuuaCCGGCuCCCC-GUGCUGGGG----UGC- -5'
18514 3' -60.5 NC_004681.1 + 6380 0.66 0.523977
Target:  5'- cGAUGGCgcuguCGAGGGGgAggaGGCCCCGgCGc -3'
miRNA:   3'- cUUACCG-----GCUCCCCgUg--CUGGGGU-GC- -5'
18514 3' -60.5 NC_004681.1 + 8245 0.67 0.494392
Target:  5'- ---aGGUCGAGGcGCACGAgCgCGCGc -3'
miRNA:   3'- cuuaCCGGCUCCcCGUGCUgGgGUGC- -5'
18514 3' -60.5 NC_004681.1 + 24885 0.67 0.484699
Target:  5'- cAAUGG-CGAGGGcgGCGACCCCGg- -3'
miRNA:   3'- cUUACCgGCUCCCcgUGCUGGGGUgc -5'
18514 3' -60.5 NC_004681.1 + 8619 0.67 0.484699
Target:  5'- cGAUGGCCGcGGGGGCGgucucACCguCCGCGa -3'
miRNA:   3'- cUUACCGGC-UCCCCGUgc---UGG--GGUGC- -5'
18514 3' -60.5 NC_004681.1 + 25672 0.67 0.475097
Target:  5'- -uAUGGCCacAGGGGCGgGGCCagGCGu -3'
miRNA:   3'- cuUACCGGc-UCCCCGUgCUGGggUGC- -5'
18514 3' -60.5 NC_004681.1 + 20484 0.67 0.475097
Target:  5'- aAGUGGcCCGAGuaGGGUACGAagaCCCgGCa -3'
miRNA:   3'- cUUACC-GGCUC--CCCGUGCU---GGGgUGc -5'
18514 3' -60.5 NC_004681.1 + 17610 0.67 0.446883
Target:  5'- ---cGGCuCGGGcGcGG-ACGACCCCGCGu -3'
miRNA:   3'- cuuaCCG-GCUC-C-CCgUGCUGGGGUGC- -5'
18514 3' -60.5 NC_004681.1 + 38040 0.68 0.437688
Target:  5'- ---aGGCCGAGGGcCAucCGGCCUCGgGg -3'
miRNA:   3'- cuuaCCGGCUCCCcGU--GCUGGGGUgC- -5'
18514 3' -60.5 NC_004681.1 + 67409 0.68 0.419627
Target:  5'- ---aGGUCGAGGaGUuCGACCUCACGc -3'
miRNA:   3'- cuuaCCGGCUCCcCGuGCUGGGGUGC- -5'
18514 3' -60.5 NC_004681.1 + 7578 0.68 0.402025
Target:  5'- ---cGGCCGGGGaGGCcgugAUGGCaCCUACGc -3'
miRNA:   3'- cuuaCCGGCUCC-CCG----UGCUG-GGGUGC- -5'
18514 3' -60.5 NC_004681.1 + 14873 0.69 0.384899
Target:  5'- aGGAUGGCC-AGGGcGUccGCGGCgUCACGg -3'
miRNA:   3'- -CUUACCGGcUCCC-CG--UGCUGgGGUGC- -5'
18514 3' -60.5 NC_004681.1 + 9227 0.69 0.368263
Target:  5'- ---cGGCgGucGGGUACGAgCCCGCa -3'
miRNA:   3'- cuuaCCGgCucCCCGUGCUgGGGUGc -5'
18514 3' -60.5 NC_004681.1 + 18203 0.69 0.34425
Target:  5'- --cUGGCCG-GGGGCGcCGAUgCCGgGg -3'
miRNA:   3'- cuuACCGGCuCCCCGU-GCUGgGGUgC- -5'
18514 3' -60.5 NC_004681.1 + 9086 0.71 0.285838
Target:  5'- cGGUGGCCGAGGuGGCGcCGACa--GCGa -3'
miRNA:   3'- cUUACCGGCUCC-CCGU-GCUGgggUGC- -5'
18514 3' -60.5 NC_004681.1 + 23382 0.71 0.281787
Target:  5'- ---aGGuuGAGGGGCuggaugagcgucugaACGACgCCACGc -3'
miRNA:   3'- cuuaCCggCUCCCCG---------------UGCUGgGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.