Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18514 | 3' | -60.5 | NC_004681.1 | + | 6380 | 0.66 | 0.523977 |
Target: 5'- cGAUGGCgcuguCGAGGGGgAggaGGCCCCGgCGc -3' miRNA: 3'- cUUACCG-----GCUCCCCgUg--CUGGGGU-GC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 7578 | 0.68 | 0.402025 |
Target: 5'- ---cGGCCGGGGaGGCcgugAUGGCaCCUACGc -3' miRNA: 3'- cuuaCCGGCUCC-CCG----UGCUG-GGGUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 8245 | 0.67 | 0.494392 |
Target: 5'- ---aGGUCGAGGcGCACGAgCgCGCGc -3' miRNA: 3'- cuuaCCGGCUCCcCGUGCUgGgGUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 8619 | 0.67 | 0.484699 |
Target: 5'- cGAUGGCCGcGGGGGCGgucucACCguCCGCGa -3' miRNA: 3'- cUUACCGGC-UCCCCGUgc---UGG--GGUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 9086 | 0.71 | 0.285838 |
Target: 5'- cGGUGGCCGAGGuGGCGcCGACa--GCGa -3' miRNA: 3'- cUUACCGGCUCC-CCGU-GCUGgggUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 9227 | 0.69 | 0.368263 |
Target: 5'- ---cGGCgGucGGGUACGAgCCCGCa -3' miRNA: 3'- cuuaCCGgCucCCCGUGCUgGGGUGc -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 14873 | 0.69 | 0.384899 |
Target: 5'- aGGAUGGCC-AGGGcGUccGCGGCgUCACGg -3' miRNA: 3'- -CUUACCGGcUCCC-CG--UGCUGgGGUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 16268 | 0.66 | 0.533991 |
Target: 5'- aGAUGGCCGAGGacaGCGCGAUgagCgACGg -3' miRNA: 3'- cUUACCGGCUCCc--CGUGCUGg--GgUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 16521 | 0.72 | 0.253467 |
Target: 5'- aGAUGGCgGGuGGcGGCaACGGuCCCCACGg -3' miRNA: 3'- cUUACCGgCU-CC-CCG-UGCU-GGGGUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 17610 | 0.67 | 0.446883 |
Target: 5'- ---cGGCuCGGGcGcGG-ACGACCCCGCGu -3' miRNA: 3'- cuuaCCG-GCUC-C-CCgUGCUGGGGUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 18069 | 0.66 | 0.533991 |
Target: 5'- gGAGUGGCCGcauGGGcuGCGgGGCCCaC-CGg -3' miRNA: 3'- -CUUACCGGCu--CCC--CGUgCUGGG-GuGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 18203 | 0.69 | 0.34425 |
Target: 5'- --cUGGCCG-GGGGCGcCGAUgCCGgGg -3' miRNA: 3'- cuuACCGGCuCCCCGU-GCUGgGGUgC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 20484 | 0.67 | 0.475097 |
Target: 5'- aAGUGGcCCGAGuaGGGUACGAagaCCCgGCa -3' miRNA: 3'- cUUACC-GGCUC--CCCGUGCU---GGGgUGc -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 23382 | 0.71 | 0.281787 |
Target: 5'- ---aGGuuGAGGGGCuggaugagcgucugaACGACgCCACGc -3' miRNA: 3'- cuuaCCggCUCCCCG---------------UGCUGgGGUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 24885 | 0.67 | 0.484699 |
Target: 5'- cAAUGG-CGAGGGcgGCGACCCCGg- -3' miRNA: 3'- cUUACCgGCUCCCcgUGCUGGGGUgc -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 25672 | 0.67 | 0.475097 |
Target: 5'- -uAUGGCCacAGGGGCGgGGCCagGCGu -3' miRNA: 3'- cuUACCGGc-UCCCCGUgCUGGggUGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 27315 | 0.74 | 0.178692 |
Target: 5'- ---cGGCCagGAGGGGCGCGACgCCGg- -3' miRNA: 3'- cuuaCCGG--CUCCCCGUGCUGgGGUgc -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 38040 | 0.68 | 0.437688 |
Target: 5'- ---aGGCCGAGGGcCAucCGGCCUCGgGg -3' miRNA: 3'- cuuaCCGGCUCCCcGU--GCUGGGGUgC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 39735 | 0.66 | 0.533991 |
Target: 5'- gGggUGGCUcuucauugcacuGAGGaucaGCAUGACCCC-CGa -3' miRNA: 3'- -CuuACCGG------------CUCCc---CGUGCUGGGGuGC- -5' |
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18514 | 3' | -60.5 | NC_004681.1 | + | 50386 | 0.66 | 0.523977 |
Target: 5'- ---cGGCCGcGGGGaCGUGGCCCUucuuGCGg -3' miRNA: 3'- cuuaCCGGCuCCCC-GUGCUGGGG----UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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