Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18514 | 5' | -56.7 | NC_004681.1 | + | 42388 | 0.66 | 0.663685 |
Target: 5'- uGCUCCcGAgcugGGCcuucuuCCAGGCCGUGa -3' miRNA: 3'- uUGAGGaCUaguaCCG------GGUCCGGUAC- -5' |
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18514 | 5' | -56.7 | NC_004681.1 | + | 32879 | 0.67 | 0.580943 |
Target: 5'- gGACUCCUGGUacgagcGGCCCagcggauugccgaccGGGCCGa- -3' miRNA: 3'- -UUGAGGACUAgua---CCGGG---------------UCCGGUac -5' |
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18514 | 5' | -56.7 | NC_004681.1 | + | 13513 | 0.68 | 0.555131 |
Target: 5'- gAACagCUGcUCAcGGUCCAGGCCGUc -3' miRNA: 3'- -UUGagGACuAGUaCCGGGUCCGGUAc -5' |
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18514 | 5' | -56.7 | NC_004681.1 | + | 38776 | 0.7 | 0.452314 |
Target: 5'- gGACUCCUGGcUCAUGGaacugCGGGCCGc- -3' miRNA: 3'- -UUGAGGACU-AGUACCgg---GUCCGGUac -5' |
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18514 | 5' | -56.7 | NC_004681.1 | + | 33806 | 0.7 | 0.438734 |
Target: 5'- cACUCCUGGUCugagaucacccaGGCCCAGuaCAUGc -3' miRNA: 3'- uUGAGGACUAGua----------CCGGGUCcgGUAC- -5' |
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18514 | 5' | -56.7 | NC_004681.1 | + | 46314 | 0.7 | 0.414148 |
Target: 5'- --aUCCUGcAUCGUGGgCCAGGCacuGUGg -3' miRNA: 3'- uugAGGAC-UAGUACCgGGUCCGg--UAC- -5' |
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18514 | 5' | -56.7 | NC_004681.1 | + | 30923 | 0.71 | 0.369334 |
Target: 5'- uGGgUCCgGG-CAgguaGGCCCAGGCCGUGg -3' miRNA: 3'- -UUgAGGaCUaGUa---CCGGGUCCGGUAC- -5' |
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18514 | 5' | -56.7 | NC_004681.1 | + | 62611 | 0.73 | 0.275958 |
Target: 5'- cGGCUgCCagGGUgccCAUGGCCUGGGCCAUGa -3' miRNA: 3'- -UUGA-GGa-CUA---GUACCGGGUCCGGUAC- -5' |
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18514 | 5' | -56.7 | NC_004681.1 | + | 62494 | 1.07 | 0.001151 |
Target: 5'- gAACUCCUGAUCAUGGCCCAGGCCAUGg -3' miRNA: 3'- -UUGAGGACUAGUACCGGGUCCGGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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