miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18515 5' -61.3 NC_004681.1 + 48105 0.66 0.509712
Target:  5'- ----aGCCCCUCaCCCCGgUgGGCAUc -3'
miRNA:   3'- cugagCGGGGAGaGGGGCgAgCUGUG- -5'
18515 5' -61.3 NC_004681.1 + 13118 0.66 0.490181
Target:  5'- cACcCGCCCCgCUgCCCGCcaccgcccuUCGugGCa -3'
miRNA:   3'- cUGaGCGGGGaGAgGGGCG---------AGCugUG- -5'
18515 5' -61.3 NC_004681.1 + 16580 0.66 0.490181
Target:  5'- cGCUacaaGCCCCcggCgUCCCCGgUCGACcuGCa -3'
miRNA:   3'- cUGAg---CGGGGa--G-AGGGGCgAGCUG--UG- -5'
18515 5' -61.3 NC_004681.1 + 19726 0.66 0.461562
Target:  5'- aGGCUUGCCCaCcCUCgCCGUcaUCGACcACg -3'
miRNA:   3'- -CUGAGCGGG-GaGAGgGGCG--AGCUG-UG- -5'
18515 5' -61.3 NC_004681.1 + 8960 0.67 0.45129
Target:  5'- cGGCUucacCGCCuccucggCCUCUCgCUGUUCGGCGCc -3'
miRNA:   3'- -CUGA----GCGG-------GGAGAGgGGCGAGCUGUG- -5'
18515 5' -61.3 NC_004681.1 + 51119 0.67 0.44298
Target:  5'- gGGCgaugaCGCCCUUguggaagagCUCCCCGacgUCGACGCc -3'
miRNA:   3'- -CUGa----GCGGGGA---------GAGGGGCg--AGCUGUG- -5'
18515 5' -61.3 NC_004681.1 + 69847 0.67 0.424828
Target:  5'- -cCUcCGUCCCUCUaugucCUCCGCUCcGCGCg -3'
miRNA:   3'- cuGA-GCGGGGAGA-----GGGGCGAGcUGUG- -5'
18515 5' -61.3 NC_004681.1 + 22827 0.67 0.424828
Target:  5'- cGACccCGCCuccgaugauCCUCaUCCCCGCguUCGACAg -3'
miRNA:   3'- -CUGa-GCGG---------GGAG-AGGGGCG--AGCUGUg -5'
18515 5' -61.3 NC_004681.1 + 43878 0.68 0.398451
Target:  5'- cGACUCGCCg----CCCUGCUCGGuCGCc -3'
miRNA:   3'- -CUGAGCGGggagaGGGGCGAGCU-GUG- -5'
18515 5' -61.3 NC_004681.1 + 57660 0.68 0.38146
Target:  5'- aGACUUGCCCUUgUCCUugaGCUcCGugGCc -3'
miRNA:   3'- -CUGAGCGGGGAgAGGGg--CGA-GCugUG- -5'
18515 5' -61.3 NC_004681.1 + 43664 0.68 0.373148
Target:  5'- -cCUCGCCCUUCagCCCGC-CGAUc- -3'
miRNA:   3'- cuGAGCGGGGAGagGGGCGaGCUGug -5'
18515 5' -61.3 NC_004681.1 + 57834 0.69 0.348958
Target:  5'- gGGCUgGCCCCUCcCuCUCGCUUgggaugagGACGCg -3'
miRNA:   3'- -CUGAgCGGGGAGaG-GGGCGAG--------CUGUG- -5'
18515 5' -61.3 NC_004681.1 + 35386 0.69 0.333463
Target:  5'- gGAUUCGCCCCUCaCCCacauCGCUcaCGAgGCc -3'
miRNA:   3'- -CUGAGCGGGGAGaGGG----GCGA--GCUgUG- -5'
18515 5' -61.3 NC_004681.1 + 25103 0.69 0.318479
Target:  5'- cGugUCGCCaCC-CUUgCCGC-CGACGCc -3'
miRNA:   3'- -CugAGCGG-GGaGAGgGGCGaGCUGUG- -5'
18515 5' -61.3 NC_004681.1 + 2880 0.7 0.296962
Target:  5'- uGACgaaGCCCCcCU-CCCGCUCGACc- -3'
miRNA:   3'- -CUGag-CGGGGaGAgGGGCGAGCUGug -5'
18515 5' -61.3 NC_004681.1 + 63159 0.97 0.003179
Target:  5'- cGACUCGCCCCUUcCCCCGCUCGACACc -3'
miRNA:   3'- -CUGAGCGGGGAGaGGGGCGAGCUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.