miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18516 5' -48.4 NC_004681.1 + 66658 0.66 0.979589
Target:  5'- cAUCGGGGgguACCCGAGGGGccGGGUGgUg -3'
miRNA:   3'- -UAGUUCU---UGGGUUUCCCcuUCUAUgA- -5'
18516 5' -48.4 NC_004681.1 + 57723 0.67 0.974167
Target:  5'- uAUCGAGuAGCCCAGucGGcGGAGGG-ACUg -3'
miRNA:   3'- -UAGUUC-UUGGGUUu-CC-CCUUCUaUGA- -5'
18516 5' -48.4 NC_004681.1 + 35729 0.67 0.971094
Target:  5'- uGUCGGGAagcGCgCCGAuggguuacAGGGGAGGAaGCg -3'
miRNA:   3'- -UAGUUCU---UG-GGUU--------UCCCCUUCUaUGa -5'
18516 5' -48.4 NC_004681.1 + 45233 0.68 0.947048
Target:  5'- gGUCAagcGGAACUacAAGGGGcAGGUGCUc -3'
miRNA:   3'- -UAGU---UCUUGGguUUCCCCuUCUAUGA- -5'
18516 5' -48.4 NC_004681.1 + 27816 0.68 0.947048
Target:  5'- -cCAuGAGCUCGAcGGGGAcgaAGAUGCg -3'
miRNA:   3'- uaGUuCUUGGGUUuCCCCU---UCUAUGa -5'
18516 5' -48.4 NC_004681.1 + 49653 0.69 0.942043
Target:  5'- cUCGGGccuGCCCGcGGGGGAAGGccaggGCg -3'
miRNA:   3'- uAGUUCu--UGGGUuUCCCCUUCUa----UGa -5'
18516 5' -48.4 NC_004681.1 + 64625 0.69 0.919031
Target:  5'- gAUCGGGucuGCCCAuGGGGGcAGGGUGu- -3'
miRNA:   3'- -UAGUUCu--UGGGUuUCCCC-UUCUAUga -5'
18516 5' -48.4 NC_004681.1 + 33140 0.71 0.858878
Target:  5'- uGUCAGGAGCCagguuGAcGGGGgcGAUGCc -3'
miRNA:   3'- -UAGUUCUUGGgu---UU-CCCCuuCUAUGa -5'
18516 5' -48.4 NC_004681.1 + 8667 0.72 0.812716
Target:  5'- -gCAGGAugCCGGGGGcGAAGGUACc -3'
miRNA:   3'- uaGUUCUugGGUUUCCcCUUCUAUGa -5'
18516 5' -48.4 NC_004681.1 + 63267 0.75 0.683904
Target:  5'- cAUCAGGGugUCGAgcGGGGGAAGggGCg -3'
miRNA:   3'- -UAGUUCUugGGUU--UCCCCUUCuaUGa -5'
18516 5' -48.4 NC_004681.1 + 63463 1.06 0.009655
Target:  5'- gAUCAAGAACCCAAAGGGGAAGAUACUc -3'
miRNA:   3'- -UAGUUCUUGGGUUUCCCCUUCUAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.