miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18517 3' -50.1 NC_004681.1 + 7396 0.66 0.963437
Target:  5'- cGUCGCugGcgUGCAgcucgucgcAGGcGGCGCa-- -3'
miRNA:   3'- -CAGCGugUuaACGUa--------UUC-CCGCGaug -5'
18517 3' -50.1 NC_004681.1 + 51570 0.66 0.963437
Target:  5'- gGUCGCcCAGUUcgAUGAGGcGaCGCUGCc -3'
miRNA:   3'- -CAGCGuGUUAAcgUAUUCC-C-GCGAUG- -5'
18517 3' -50.1 NC_004681.1 + 17307 0.66 0.95956
Target:  5'- --gGCGCGcgUGCccgcGGGaCGCUACa -3'
miRNA:   3'- cagCGUGUuaACGuauuCCC-GCGAUG- -5'
18517 3' -50.1 NC_004681.1 + 59793 0.66 0.951432
Target:  5'- -cCGCACucccagcaggggGCGUGGcGGCGCUGCc -3'
miRNA:   3'- caGCGUGuuaa--------CGUAUUcCCGCGAUG- -5'
18517 3' -50.1 NC_004681.1 + 37476 0.67 0.935955
Target:  5'- -cCGCAUuggcagccggGAUUGCAUGGuGGCGCggGCa -3'
miRNA:   3'- caGCGUG----------UUAACGUAUUcCCGCGa-UG- -5'
18517 3' -50.1 NC_004681.1 + 68345 0.68 0.909811
Target:  5'- cGUCGCACg---GCGUAgucgaugagaccguGGcGGCGUUGCu -3'
miRNA:   3'- -CAGCGUGuuaaCGUAU--------------UC-CCGCGAUG- -5'
18517 3' -50.1 NC_004681.1 + 38603 0.68 0.90504
Target:  5'- -cCGuCACAAacgUGCAgcucAAGGGgGCUACc -3'
miRNA:   3'- caGC-GUGUUa--ACGUa---UUCCCgCGAUG- -5'
18517 3' -50.1 NC_004681.1 + 9633 0.68 0.90504
Target:  5'- --aGCugGAagGCcgAGGGGCGgUACa -3'
miRNA:   3'- cagCGugUUaaCGuaUUCCCGCgAUG- -5'
18517 3' -50.1 NC_004681.1 + 34345 0.69 0.866098
Target:  5'- -aCGcCGCGGcgGCGUGAGGguugugcGCGCUGCg -3'
miRNA:   3'- caGC-GUGUUaaCGUAUUCC-------CGCGAUG- -5'
18517 3' -50.1 NC_004681.1 + 23156 0.71 0.761907
Target:  5'- -gCGCGCGAUUGCGggcGGGGaCGUUGu -3'
miRNA:   3'- caGCGUGUUAACGUau-UCCC-GCGAUg -5'
18517 3' -50.1 NC_004681.1 + 75387 0.71 0.740497
Target:  5'- -cCGCACuuggUGCAggguuuGGGaGCGCUACg -3'
miRNA:   3'- caGCGUGuua-ACGUau----UCC-CGCGAUG- -5'
18517 3' -50.1 NC_004681.1 + 56090 0.75 0.54943
Target:  5'- cGUCGCGC---UGCGUGAGGGC-CUGg -3'
miRNA:   3'- -CAGCGUGuuaACGUAUUCCCGcGAUg -5'
18517 3' -50.1 NC_004681.1 + 31525 0.77 0.442947
Target:  5'- uGUCGCAC--UUGCcgAAGGGaGCUGCa -3'
miRNA:   3'- -CAGCGUGuuAACGuaUUCCCgCGAUG- -5'
18517 3' -50.1 NC_004681.1 + 63716 1.11 0.002944
Target:  5'- gGUCGCACAAUUGCAUAAGGGCGCUACg -3'
miRNA:   3'- -CAGCGUGUUAACGUAUUCCCGCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.