miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18517 5' -56.3 NC_004681.1 + 39475 0.66 0.799186
Target:  5'- gCGGUGCGCUggcucaagGCCGgUGGCagcGAGgCGGGa -3'
miRNA:   3'- -GCCAUGCGG--------UGGUgGCUGa--CUU-GCCC- -5'
18517 5' -56.3 NC_004681.1 + 3120 0.66 0.797342
Target:  5'- gGGUGCGggcaUUGCCGCUGGCguagucguaggaGAGCGGGu -3'
miRNA:   3'- gCCAUGC----GGUGGUGGCUGa-----------CUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 75182 0.66 0.789903
Target:  5'- gCGGUGaggGCUACCACgGGUUGAuUGGGu -3'
miRNA:   3'- -GCCAUg--CGGUGGUGgCUGACUuGCCC- -5'
18517 5' -56.3 NC_004681.1 + 6234 0.66 0.789903
Target:  5'- -cGUACuuguCCAUCGCgGACUGGauGCGGGc -3'
miRNA:   3'- gcCAUGc---GGUGGUGgCUGACU--UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 42527 0.66 0.789903
Target:  5'- gGGUcgugcAgGCUGCgCGCCGACgaGACGGGg -3'
miRNA:   3'- gCCA-----UgCGGUG-GUGGCUGacUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 25603 0.66 0.78047
Target:  5'- cCGGUACGgCGuCC-CCG-CUGAGCGa- -3'
miRNA:   3'- -GCCAUGCgGU-GGuGGCuGACUUGCcc -5'
18517 5' -56.3 NC_004681.1 + 22047 0.66 0.771861
Target:  5'- aGG-ACGCCgGCCGCCGACgaagagguccuucccGAugguguACGGGu -3'
miRNA:   3'- gCCaUGCGG-UGGUGGCUGa--------------CU------UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 52708 0.66 0.770897
Target:  5'- gCGGUuuCGCUACCGCCuGGCUGcAUGa- -3'
miRNA:   3'- -GCCAu-GCGGUGGUGG-CUGACuUGCcc -5'
18517 5' -56.3 NC_004681.1 + 10666 0.66 0.770897
Target:  5'- cCGGUGC-CCGCgGCCGucGCgUGcaaGGCGGGa -3'
miRNA:   3'- -GCCAUGcGGUGgUGGC--UG-AC---UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 6265 0.66 0.770897
Target:  5'- cCGGUGuCGCCACC-CCGAacga--GGGc -3'
miRNA:   3'- -GCCAU-GCGGUGGuGGCUgacuugCCC- -5'
18517 5' -56.3 NC_004681.1 + 57002 0.66 0.768967
Target:  5'- gGGU-CGgCACCACCGaaGCUGAcccgguccauccCGGGg -3'
miRNA:   3'- gCCAuGCgGUGGUGGC--UGACUu-----------GCCC- -5'
18517 5' -56.3 NC_004681.1 + 61073 0.66 0.761194
Target:  5'- uCGGcACGCUgACCGCCGACcccGAgcuGCGGu -3'
miRNA:   3'- -GCCaUGCGG-UGGUGGCUGa--CU---UGCCc -5'
18517 5' -56.3 NC_004681.1 + 8295 0.66 0.761194
Target:  5'- gCGG-ACGCCGCCAaggaCGGcCUGGACa-- -3'
miRNA:   3'- -GCCaUGCGGUGGUg---GCU-GACUUGccc -5'
18517 5' -56.3 NC_004681.1 + 65029 0.66 0.761194
Target:  5'- aGGcGCGUCGCCACCucguGCUccaGGCGGGc -3'
miRNA:   3'- gCCaUGCGGUGGUGGc---UGAc--UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 25196 0.66 0.760217
Target:  5'- gGGUcCGCgGCCaACCGaggugccgaggagGCUGAGCGaGGu -3'
miRNA:   3'- gCCAuGCGgUGG-UGGC-------------UGACUUGC-CC- -5'
18517 5' -56.3 NC_004681.1 + 68922 0.67 0.751371
Target:  5'- aCGGc-CGCCGCCACCGAagacuucgaguaCgagGAACaGGa -3'
miRNA:   3'- -GCCauGCGGUGGUGGCU------------Ga--CUUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 11793 0.67 0.741436
Target:  5'- uCGGU--GCCAUCACCGA--GGACGGc -3'
miRNA:   3'- -GCCAugCGGUGGUGGCUgaCUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 63590 0.67 0.741436
Target:  5'- ----gUGCC-CCAUUGugUGGGCGGGg -3'
miRNA:   3'- gccauGCGGuGGUGGCugACUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 41808 0.67 0.731401
Target:  5'- uGGaagACGCCGCCucCCGGggcauuuccCUGcAGCGGGc -3'
miRNA:   3'- gCCa--UGCGGUGGu-GGCU---------GAC-UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 9004 0.67 0.731401
Target:  5'- gGGUAC-CCGCCGCCaGCcagGAGCuGGa -3'
miRNA:   3'- gCCAUGcGGUGGUGGcUGa--CUUGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.