Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18517 | 5' | -56.3 | NC_004681.1 | + | 6265 | 0.66 | 0.770897 |
Target: 5'- cCGGUGuCGCCACC-CCGAacga--GGGc -3' miRNA: 3'- -GCCAU-GCGGUGGuGGCUgacuugCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 8295 | 0.66 | 0.761194 |
Target: 5'- gCGG-ACGCCGCCAaggaCGGcCUGGACa-- -3' miRNA: 3'- -GCCaUGCGGUGGUg---GCU-GACUUGccc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 3120 | 0.66 | 0.797342 |
Target: 5'- gGGUGCGggcaUUGCCGCUGGCguagucguaggaGAGCGGGu -3' miRNA: 3'- gCCAUGC----GGUGGUGGCUGa-----------CUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 42527 | 0.66 | 0.789903 |
Target: 5'- gGGUcgugcAgGCUGCgCGCCGACgaGACGGGg -3' miRNA: 3'- gCCA-----UgCGGUG-GUGGCUGacUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 22047 | 0.66 | 0.771861 |
Target: 5'- aGG-ACGCCgGCCGCCGACgaagagguccuucccGAugguguACGGGu -3' miRNA: 3'- gCCaUGCGG-UGGUGGCUGa--------------CU------UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 75182 | 0.66 | 0.789903 |
Target: 5'- gCGGUGaggGCUACCACgGGUUGAuUGGGu -3' miRNA: 3'- -GCCAUg--CGGUGGUGgCUGACUuGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 65029 | 0.66 | 0.761194 |
Target: 5'- aGGcGCGUCGCCACCucguGCUccaGGCGGGc -3' miRNA: 3'- gCCaUGCGGUGGUGGc---UGAc--UUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 25603 | 0.66 | 0.78047 |
Target: 5'- cCGGUACGgCGuCC-CCG-CUGAGCGa- -3' miRNA: 3'- -GCCAUGCgGU-GGuGGCuGACUUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 6234 | 0.66 | 0.789903 |
Target: 5'- -cGUACuuguCCAUCGCgGACUGGauGCGGGc -3' miRNA: 3'- gcCAUGc---GGUGGUGgCUGACU--UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 52708 | 0.66 | 0.770897 |
Target: 5'- gCGGUuuCGCUACCGCCuGGCUGcAUGa- -3' miRNA: 3'- -GCCAu-GCGGUGGUGG-CUGACuUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 10666 | 0.66 | 0.770897 |
Target: 5'- cCGGUGC-CCGCgGCCGucGCgUGcaaGGCGGGa -3' miRNA: 3'- -GCCAUGcGGUGgUGGC--UG-AC---UUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 25196 | 0.66 | 0.760217 |
Target: 5'- gGGUcCGCgGCCaACCGaggugccgaggagGCUGAGCGaGGu -3' miRNA: 3'- gCCAuGCGgUGG-UGGC-------------UGACUUGC-CC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 39475 | 0.66 | 0.799186 |
Target: 5'- gCGGUGCGCUggcucaagGCCGgUGGCagcGAGgCGGGa -3' miRNA: 3'- -GCCAUGCGG--------UGGUgGCUGa--CUU-GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 57002 | 0.66 | 0.768967 |
Target: 5'- gGGU-CGgCACCACCGaaGCUGAcccgguccauccCGGGg -3' miRNA: 3'- gCCAuGCgGUGGUGGC--UGACUu-----------GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 61073 | 0.66 | 0.761194 |
Target: 5'- uCGGcACGCUgACCGCCGACcccGAgcuGCGGu -3' miRNA: 3'- -GCCaUGCGG-UGGUGGCUGa--CU---UGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 63590 | 0.67 | 0.741436 |
Target: 5'- ----gUGCC-CCAUUGugUGGGCGGGg -3' miRNA: 3'- gccauGCGGuGGUGGCugACUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 30858 | 0.67 | 0.721276 |
Target: 5'- aCGGcACGCCGcCCGCCGACcc-GCuGGa -3' miRNA: 3'- -GCCaUGCGGU-GGUGGCUGacuUGcCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 9004 | 0.67 | 0.731401 |
Target: 5'- gGGUAC-CCGCCGCCaGCcagGAGCuGGa -3' miRNA: 3'- gCCAUGcGGUGGUGGcUGa--CUUGcCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 41056 | 0.67 | 0.731401 |
Target: 5'- aCGGcccucuucgGCGCCGCCGCCGAUgugcucaccGAACGc- -3' miRNA: 3'- -GCCa--------UGCGGUGGUGGCUGa--------CUUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 11793 | 0.67 | 0.741436 |
Target: 5'- uCGGU--GCCAUCACCGA--GGACGGc -3' miRNA: 3'- -GCCAugCGGUGGUGGCUgaCUUGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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