miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18517 5' -56.3 NC_004681.1 + 63750 1.11 0.001105
Target:  5'- uCGGUACGCCACCACCGACUGAACGGGg -3'
miRNA:   3'- -GCCAUGCGGUGGUGGCUGACUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 14221 0.79 0.17188
Target:  5'- aCGGcgcUACGCCGCUACCaGGCUGAgcugacGCGGGc -3'
miRNA:   3'- -GCC---AUGCGGUGGUGG-CUGACU------UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 50046 0.73 0.383623
Target:  5'- uCGGcUACGUCuccgacGCCAUCGACUGccuGCGGGu -3'
miRNA:   3'- -GCC-AUGCGG------UGGUGGCUGACu--UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 30346 0.73 0.392202
Target:  5'- -cGUACcgGCCGCCGCCG-CUGuGGCGGGc -3'
miRNA:   3'- gcCAUG--CGGUGGUGGCuGAC-UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 58642 0.73 0.40973
Target:  5'- aGGUguccuGCGCCACgGCCGcCUGcgccGCGGGc -3'
miRNA:   3'- gCCA-----UGCGGUGgUGGCuGACu---UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 56315 0.72 0.426826
Target:  5'- uCGGgucgACGCCgguccagGCCACCGACUcAAgGGGc -3'
miRNA:   3'- -GCCa---UGCGG-------UGGUGGCUGAcUUgCCC- -5'
18517 5' -56.3 NC_004681.1 + 7283 0.72 0.427737
Target:  5'- cCGaGUGCGCCGCCugCGAC-GAGCu-- -3'
miRNA:   3'- -GC-CAUGCGGUGGugGCUGaCUUGccc -5'
18517 5' -56.3 NC_004681.1 + 69509 0.71 0.474714
Target:  5'- aGGUGCGCCA-CGCCGugUGcucacugcugcGGCGGc -3'
miRNA:   3'- gCCAUGCGGUgGUGGCugAC-----------UUGCCc -5'
18517 5' -56.3 NC_004681.1 + 47099 0.71 0.484418
Target:  5'- aGGacgaGCCGCCGCCG-CUGAGCGa- -3'
miRNA:   3'- gCCaug-CGGUGGUGGCuGACUUGCcc -5'
18517 5' -56.3 NC_004681.1 + 26825 0.71 0.52413
Target:  5'- aGGUugGCCGgggcgggcUUACCGAg-GAACGGGu -3'
miRNA:   3'- gCCAugCGGU--------GGUGGCUgaCUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 43032 0.7 0.551626
Target:  5'- aCGGUucggcgcagcguucGCaGCCGCCACCGGagUGAGCaGGa -3'
miRNA:   3'- -GCCA--------------UG-CGGUGGUGGCUg-ACUUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 8715 0.7 0.565022
Target:  5'- ---aACGCCGCCGCgGucGCUGAAgcCGGGa -3'
miRNA:   3'- gccaUGCGGUGGUGgC--UGACUU--GCCC- -5'
18517 5' -56.3 NC_004681.1 + 16103 0.7 0.565022
Target:  5'- gCGGcGCGCacaGCCGCCacGGCUGuguCGGGu -3'
miRNA:   3'- -GCCaUGCGg--UGGUGG--CUGACuu-GCCC- -5'
18517 5' -56.3 NC_004681.1 + 44940 0.7 0.575385
Target:  5'- gCGGUGgaGCCGCCACCG-CgagcuCGGGc -3'
miRNA:   3'- -GCCAUg-CGGUGGUGGCuGacuu-GCCC- -5'
18517 5' -56.3 NC_004681.1 + 50261 0.7 0.575385
Target:  5'- uGG-ACGUCGCUcauuuGCCGACUuGGACGGa -3'
miRNA:   3'- gCCaUGCGGUGG-----UGGCUGA-CUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 57804 0.69 0.596231
Target:  5'- gCGccGCGCCGCCGaggUGGCgaagGAGCGGGg -3'
miRNA:   3'- -GCcaUGCGGUGGUg--GCUGa---CUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 2130 0.69 0.610893
Target:  5'- gCGGUGCgGCCGCCcuccacgaccaccugGCCGcgGCcGGAUGGGu -3'
miRNA:   3'- -GCCAUG-CGGUGG---------------UGGC--UGaCUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 28826 0.69 0.617188
Target:  5'- aGGUgAUGCCAguuaCGCCGgucACUGAGCGGu -3'
miRNA:   3'- gCCA-UGCGGUg---GUGGC---UGACUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 70906 0.69 0.617188
Target:  5'- aCGGUgcGCGCUACCGCugaggcuaugCGACUcAACGGa -3'
miRNA:   3'- -GCCA--UGCGGUGGUG----------GCUGAcUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 45273 0.69 0.617188
Target:  5'- cCGG-ACGCCccGCCcgugACCGGC-GAAUGGGu -3'
miRNA:   3'- -GCCaUGCGG--UGG----UGGCUGaCUUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.