Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18517 | 5' | -56.3 | NC_004681.1 | + | 8715 | 0.7 | 0.565022 |
Target: 5'- ---aACGCCGCCGCgGucGCUGAAgcCGGGa -3' miRNA: 3'- gccaUGCGGUGGUGgC--UGACUU--GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 16103 | 0.7 | 0.565022 |
Target: 5'- gCGGcGCGCacaGCCGCCacGGCUGuguCGGGu -3' miRNA: 3'- -GCCaUGCGg--UGGUGG--CUGACuu-GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 43032 | 0.7 | 0.551626 |
Target: 5'- aCGGUucggcgcagcguucGCaGCCGCCACCGGagUGAGCaGGa -3' miRNA: 3'- -GCCA--------------UG-CGGUGGUGGCUg-ACUUGcCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 26825 | 0.71 | 0.52413 |
Target: 5'- aGGUugGCCGgggcgggcUUACCGAg-GAACGGGu -3' miRNA: 3'- gCCAugCGGU--------GGUGGCUgaCUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 47099 | 0.71 | 0.484418 |
Target: 5'- aGGacgaGCCGCCGCCG-CUGAGCGa- -3' miRNA: 3'- gCCaug-CGGUGGUGGCuGACUUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 69509 | 0.71 | 0.474714 |
Target: 5'- aGGUGCGCCA-CGCCGugUGcucacugcugcGGCGGc -3' miRNA: 3'- gCCAUGCGGUgGUGGCugAC-----------UUGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 7283 | 0.72 | 0.427737 |
Target: 5'- cCGaGUGCGCCGCCugCGAC-GAGCu-- -3' miRNA: 3'- -GC-CAUGCGGUGGugGCUGaCUUGccc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 56315 | 0.72 | 0.426826 |
Target: 5'- uCGGgucgACGCCgguccagGCCACCGACUcAAgGGGc -3' miRNA: 3'- -GCCa---UGCGG-------UGGUGGCUGAcUUgCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 58642 | 0.73 | 0.40973 |
Target: 5'- aGGUguccuGCGCCACgGCCGcCUGcgccGCGGGc -3' miRNA: 3'- gCCA-----UGCGGUGgUGGCuGACu---UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 30346 | 0.73 | 0.392202 |
Target: 5'- -cGUACcgGCCGCCGCCG-CUGuGGCGGGc -3' miRNA: 3'- gcCAUG--CGGUGGUGGCuGAC-UUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 50046 | 0.73 | 0.383623 |
Target: 5'- uCGGcUACGUCuccgacGCCAUCGACUGccuGCGGGu -3' miRNA: 3'- -GCC-AUGCGG------UGGUGGCUGACu--UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 14221 | 0.79 | 0.17188 |
Target: 5'- aCGGcgcUACGCCGCUACCaGGCUGAgcugacGCGGGc -3' miRNA: 3'- -GCC---AUGCGGUGGUGG-CUGACU------UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 63750 | 1.11 | 0.001105 |
Target: 5'- uCGGUACGCCACCACCGACUGAACGGGg -3' miRNA: 3'- -GCCAUGCGGUGGUGGCUGACUUGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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