miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18517 5' -56.3 NC_004681.1 + 2130 0.69 0.610893
Target:  5'- gCGGUGCgGCCGCCcuccacgaccaccugGCCGcgGCcGGAUGGGu -3'
miRNA:   3'- -GCCAUG-CGGUGG---------------UGGC--UGaCUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 3120 0.66 0.797342
Target:  5'- gGGUGCGggcaUUGCCGCUGGCguagucguaggaGAGCGGGu -3'
miRNA:   3'- gCCAUGC----GGUGGUGGCUGa-----------CUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 6234 0.66 0.789903
Target:  5'- -cGUACuuguCCAUCGCgGACUGGauGCGGGc -3'
miRNA:   3'- gcCAUGc---GGUGGUGgCUGACU--UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 6265 0.66 0.770897
Target:  5'- cCGGUGuCGCCACC-CCGAacga--GGGc -3'
miRNA:   3'- -GCCAU-GCGGUGGuGGCUgacuugCCC- -5'
18517 5' -56.3 NC_004681.1 + 7283 0.72 0.427737
Target:  5'- cCGaGUGCGCCGCCugCGAC-GAGCu-- -3'
miRNA:   3'- -GC-CAUGCGGUGGugGCUGaCUUGccc -5'
18517 5' -56.3 NC_004681.1 + 8295 0.66 0.761194
Target:  5'- gCGG-ACGCCGCCAaggaCGGcCUGGACa-- -3'
miRNA:   3'- -GCCaUGCGGUGGUg---GCU-GACUUGccc -5'
18517 5' -56.3 NC_004681.1 + 8715 0.7 0.565022
Target:  5'- ---aACGCCGCCGCgGucGCUGAAgcCGGGa -3'
miRNA:   3'- gccaUGCGGUGGUGgC--UGACUU--GCCC- -5'
18517 5' -56.3 NC_004681.1 + 9004 0.67 0.731401
Target:  5'- gGGUAC-CCGCCGCCaGCcagGAGCuGGa -3'
miRNA:   3'- gCCAUGcGGUGGUGGcUGa--CUUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 9434 0.68 0.648691
Target:  5'- cCGGgACGCCccagauguucuuGCCGCCG-UUGAcCGGGu -3'
miRNA:   3'- -GCCaUGCGG------------UGGUGGCuGACUuGCCC- -5'
18517 5' -56.3 NC_004681.1 + 10666 0.66 0.770897
Target:  5'- cCGGUGC-CCGCgGCCGucGCgUGcaaGGCGGGa -3'
miRNA:   3'- -GCCAUGcGGUGgUGGC--UG-AC---UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 11793 0.67 0.741436
Target:  5'- uCGGU--GCCAUCACCGA--GGACGGc -3'
miRNA:   3'- -GCCAugCGGUGGUGGCUgaCUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 12841 0.68 0.700794
Target:  5'- cCGGUACGUCcaGCCugCaGCUGGGuacguCGGGc -3'
miRNA:   3'- -GCCAUGCGG--UGGugGcUGACUU-----GCCC- -5'
18517 5' -56.3 NC_004681.1 + 14221 0.79 0.17188
Target:  5'- aCGGcgcUACGCCGCUACCaGGCUGAgcugacGCGGGc -3'
miRNA:   3'- -GCC---AUGCGGUGGUGG-CUGACU------UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 16103 0.7 0.565022
Target:  5'- gCGGcGCGCacaGCCGCCacGGCUGuguCGGGu -3'
miRNA:   3'- -GCCaUGCGg--UGGUGG--CUGACuu-GCCC- -5'
18517 5' -56.3 NC_004681.1 + 22047 0.66 0.771861
Target:  5'- aGG-ACGCCgGCCGCCGACgaagagguccuucccGAugguguACGGGu -3'
miRNA:   3'- gCCaUGCGG-UGGUGGCUGa--------------CU------UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 25196 0.66 0.760217
Target:  5'- gGGUcCGCgGCCaACCGaggugccgaggagGCUGAGCGaGGu -3'
miRNA:   3'- gCCAuGCGgUGG-UGGC-------------UGACUUGC-CC- -5'
18517 5' -56.3 NC_004681.1 + 25301 0.68 0.666502
Target:  5'- gCGGUcgccgccguugccaGCGCCGCCAggGGCcUGAcCGGGg -3'
miRNA:   3'- -GCCA--------------UGCGGUGGUggCUG-ACUuGCCC- -5'
18517 5' -56.3 NC_004681.1 + 25603 0.66 0.78047
Target:  5'- cCGGUACGgCGuCC-CCG-CUGAGCGa- -3'
miRNA:   3'- -GCCAUGCgGU-GGuGGCuGACUUGCcc -5'
18517 5' -56.3 NC_004681.1 + 26825 0.71 0.52413
Target:  5'- aGGUugGCCGgggcgggcUUACCGAg-GAACGGGu -3'
miRNA:   3'- gCCAugCGGU--------GGUGGCUgaCUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 28251 0.68 0.699763
Target:  5'- cCGGUGCcgcuGCCGCCGCuCGAUccgccgccgccguUGcccGCGGGg -3'
miRNA:   3'- -GCCAUG----CGGUGGUG-GCUG-------------ACu--UGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.