miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18517 5' -56.3 NC_004681.1 + 28826 0.69 0.617188
Target:  5'- aGGUgAUGCCAguuaCGCCGgucACUGAGCGGu -3'
miRNA:   3'- gCCA-UGCGGUg---GUGGC---UGACUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 30346 0.73 0.392202
Target:  5'- -cGUACcgGCCGCCGCCG-CUGuGGCGGGc -3'
miRNA:   3'- gcCAUG--CGGUGGUGGCuGAC-UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 30858 0.67 0.721276
Target:  5'- aCGGcACGCCGcCCGCCGACcc-GCuGGa -3'
miRNA:   3'- -GCCaUGCGGU-GGUGGCUGacuUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 33098 0.69 0.642393
Target:  5'- uCGGcAgGCCGCUACCGggguaGCUGAcacccuucgcgcgguACGGGu -3'
miRNA:   3'- -GCCaUgCGGUGGUGGC-----UGACU---------------UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 37598 0.68 0.68942
Target:  5'- gGGUgcucugaugcccGCGCCACCAugcaaucCCGGCUGccaauGCGGc -3'
miRNA:   3'- gCCA------------UGCGGUGGU-------GGCUGACu----UGCCc -5'
18517 5' -56.3 NC_004681.1 + 39475 0.66 0.799186
Target:  5'- gCGGUGCGCUggcucaagGCCGgUGGCagcGAGgCGGGa -3'
miRNA:   3'- -GCCAUGCGG--------UGGUgGCUGa--CUU-GCCC- -5'
18517 5' -56.3 NC_004681.1 + 41056 0.67 0.731401
Target:  5'- aCGGcccucuucgGCGCCGCCGCCGAUgugcucaccGAACGc- -3'
miRNA:   3'- -GCCa--------UGCGGUGGUGGCUGa--------CUUGCcc -5'
18517 5' -56.3 NC_004681.1 + 41808 0.67 0.731401
Target:  5'- uGGaagACGCCGCCucCCGGggcauuuccCUGcAGCGGGc -3'
miRNA:   3'- gCCa--UGCGGUGGu-GGCU---------GAC-UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 42527 0.66 0.789903
Target:  5'- gGGUcgugcAgGCUGCgCGCCGACgaGACGGGg -3'
miRNA:   3'- gCCA-----UgCGGUG-GUGGCUGacUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 43032 0.7 0.551626
Target:  5'- aCGGUucggcgcagcguucGCaGCCGCCACCGGagUGAGCaGGa -3'
miRNA:   3'- -GCCA--------------UG-CGGUGGUGGCUg-ACUUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 44940 0.7 0.575385
Target:  5'- gCGGUGgaGCCGCCACCG-CgagcuCGGGc -3'
miRNA:   3'- -GCCAUg-CGGUGGUGGCuGacuu-GCCC- -5'
18517 5' -56.3 NC_004681.1 + 45273 0.69 0.617188
Target:  5'- cCGG-ACGCCccGCCcgugACCGGC-GAAUGGGu -3'
miRNA:   3'- -GCCaUGCGG--UGG----UGGCUGaCUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 47099 0.71 0.484418
Target:  5'- aGGacgaGCCGCCGCCG-CUGAGCGa- -3'
miRNA:   3'- gCCaug-CGGUGGUGGCuGACUUGCcc -5'
18517 5' -56.3 NC_004681.1 + 50046 0.73 0.383623
Target:  5'- uCGGcUACGUCuccgacGCCAUCGACUGccuGCGGGu -3'
miRNA:   3'- -GCC-AUGCGG------UGGUGGCUGACu--UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 50261 0.7 0.575385
Target:  5'- uGG-ACGUCGCUcauuuGCCGACUuGGACGGa -3'
miRNA:   3'- gCCaUGCGGUGG-----UGGCUGA-CUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 52227 0.68 0.700794
Target:  5'- uGcUugGCCGCCACCuugaGGCU--GCGGGa -3'
miRNA:   3'- gCcAugCGGUGGUGG----CUGAcuUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 52708 0.66 0.770897
Target:  5'- gCGGUuuCGCUACCGCCuGGCUGcAUGa- -3'
miRNA:   3'- -GCCAu-GCGGUGGUGG-CUGACuUGCcc -5'
18517 5' -56.3 NC_004681.1 + 54366 0.68 0.700794
Target:  5'- gGGcACGCCucGCCACCcaGCUGggUGuGGa -3'
miRNA:   3'- gCCaUGCGG--UGGUGGc-UGACuuGC-CC- -5'
18517 5' -56.3 NC_004681.1 + 56315 0.72 0.426826
Target:  5'- uCGGgucgACGCCgguccagGCCACCGACUcAAgGGGc -3'
miRNA:   3'- -GCCa---UGCGG-------UGGUGGCUGAcUUgCCC- -5'
18517 5' -56.3 NC_004681.1 + 57002 0.66 0.768967
Target:  5'- gGGU-CGgCACCACCGaaGCUGAcccgguccauccCGGGg -3'
miRNA:   3'- gCCAuGCgGUGGUGGC--UGACUu-----------GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.