Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18517 | 5' | -56.3 | NC_004681.1 | + | 75182 | 0.66 | 0.789903 |
Target: 5'- gCGGUGaggGCUACCACgGGUUGAuUGGGu -3' miRNA: 3'- -GCCAUg--CGGUGGUGgCUGACUuGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 70943 | 0.68 | 0.680068 |
Target: 5'- aGGcAUGCuCGCgGCCG-CUGAGCGuGGa -3' miRNA: 3'- gCCaUGCG-GUGgUGGCuGACUUGC-CC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 70906 | 0.69 | 0.617188 |
Target: 5'- aCGGUgcGCGCUACCGCugaggcuaugCGACUcAACGGa -3' miRNA: 3'- -GCCA--UGCGGUGGUG----------GCUGAcUUGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 69509 | 0.71 | 0.474714 |
Target: 5'- aGGUGCGCCA-CGCCGugUGcucacugcugcGGCGGc -3' miRNA: 3'- gCCAUGCGGUgGUGGCugAC-----------UUGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 68922 | 0.67 | 0.751371 |
Target: 5'- aCGGc-CGCCGCCACCGAagacuucgaguaCgagGAACaGGa -3' miRNA: 3'- -GCCauGCGGUGGUGGCU------------Ga--CUUGcCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 67517 | 0.68 | 0.700794 |
Target: 5'- gGGUugGCCuugaGCC-ACUGGACGGc -3' miRNA: 3'- gCCAugCGGugg-UGGcUGACUUGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 65029 | 0.66 | 0.761194 |
Target: 5'- aGGcGCGUCGCCACCucguGCUccaGGCGGGc -3' miRNA: 3'- gCCaUGCGGUGGUGGc---UGAc--UUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 63750 | 1.11 | 0.001105 |
Target: 5'- uCGGUACGCCACCACCGACUGAACGGGg -3' miRNA: 3'- -GCCAUGCGGUGGUGGCUGACUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 63590 | 0.67 | 0.741436 |
Target: 5'- ----gUGCC-CCAUUGugUGGGCGGGg -3' miRNA: 3'- gccauGCGGuGGUGGCugACUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 62232 | 0.68 | 0.654984 |
Target: 5'- aGGUACGCCucggggccgaugauGcgcucguCCACCGACUGcAGCaGGa -3' miRNA: 3'- gCCAUGCGG--------------U-------GGUGGCUGAC-UUGcCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 61073 | 0.66 | 0.761194 |
Target: 5'- uCGGcACGCUgACCGCCGACcccGAgcuGCGGu -3' miRNA: 3'- -GCCaUGCGG-UGGUGGCUGa--CU---UGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 58642 | 0.73 | 0.40973 |
Target: 5'- aGGUguccuGCGCCACgGCCGcCUGcgccGCGGGc -3' miRNA: 3'- gCCA-----UGCGGUGgUGGCuGACu---UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 57804 | 0.69 | 0.596231 |
Target: 5'- gCGccGCGCCGCCGaggUGGCgaagGAGCGGGg -3' miRNA: 3'- -GCcaUGCGGUGGUg--GCUGa---CUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 57002 | 0.66 | 0.768967 |
Target: 5'- gGGU-CGgCACCACCGaaGCUGAcccgguccauccCGGGg -3' miRNA: 3'- gCCAuGCgGUGGUGGC--UGACUu-----------GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 56315 | 0.72 | 0.426826 |
Target: 5'- uCGGgucgACGCCgguccagGCCACCGACUcAAgGGGc -3' miRNA: 3'- -GCCa---UGCGG-------UGGUGGCUGAcUUgCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 54366 | 0.68 | 0.700794 |
Target: 5'- gGGcACGCCucGCCACCcaGCUGggUGuGGa -3' miRNA: 3'- gCCaUGCGG--UGGUGGc-UGACuuGC-CC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 52708 | 0.66 | 0.770897 |
Target: 5'- gCGGUuuCGCUACCGCCuGGCUGcAUGa- -3' miRNA: 3'- -GCCAu-GCGGUGGUGG-CUGACuUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 52227 | 0.68 | 0.700794 |
Target: 5'- uGcUugGCCGCCACCuugaGGCU--GCGGGa -3' miRNA: 3'- gCcAugCGGUGGUGG----CUGAcuUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 50261 | 0.7 | 0.575385 |
Target: 5'- uGG-ACGUCGCUcauuuGCCGACUuGGACGGa -3' miRNA: 3'- gCCaUGCGGUGG-----UGGCUGA-CUUGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 50046 | 0.73 | 0.383623 |
Target: 5'- uCGGcUACGUCuccgacGCCAUCGACUGccuGCGGGu -3' miRNA: 3'- -GCC-AUGCGG------UGGUGGCUGACu--UGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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