Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18517 | 5' | -56.3 | NC_004681.1 | + | 47099 | 0.71 | 0.484418 |
Target: 5'- aGGacgaGCCGCCGCCG-CUGAGCGa- -3' miRNA: 3'- gCCaug-CGGUGGUGGCuGACUUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 45273 | 0.69 | 0.617188 |
Target: 5'- cCGG-ACGCCccGCCcgugACCGGC-GAAUGGGu -3' miRNA: 3'- -GCCaUGCGG--UGG----UGGCUGaCUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 44940 | 0.7 | 0.575385 |
Target: 5'- gCGGUGgaGCCGCCACCG-CgagcuCGGGc -3' miRNA: 3'- -GCCAUg-CGGUGGUGGCuGacuu-GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 43032 | 0.7 | 0.551626 |
Target: 5'- aCGGUucggcgcagcguucGCaGCCGCCACCGGagUGAGCaGGa -3' miRNA: 3'- -GCCA--------------UG-CGGUGGUGGCUg-ACUUGcCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 42527 | 0.66 | 0.789903 |
Target: 5'- gGGUcgugcAgGCUGCgCGCCGACgaGACGGGg -3' miRNA: 3'- gCCA-----UgCGGUG-GUGGCUGacUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 41808 | 0.67 | 0.731401 |
Target: 5'- uGGaagACGCCGCCucCCGGggcauuuccCUGcAGCGGGc -3' miRNA: 3'- gCCa--UGCGGUGGu-GGCU---------GAC-UUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 41056 | 0.67 | 0.731401 |
Target: 5'- aCGGcccucuucgGCGCCGCCGCCGAUgugcucaccGAACGc- -3' miRNA: 3'- -GCCa--------UGCGGUGGUGGCUGa--------CUUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 39475 | 0.66 | 0.799186 |
Target: 5'- gCGGUGCGCUggcucaagGCCGgUGGCagcGAGgCGGGa -3' miRNA: 3'- -GCCAUGCGG--------UGGUgGCUGa--CUU-GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 37598 | 0.68 | 0.68942 |
Target: 5'- gGGUgcucugaugcccGCGCCACCAugcaaucCCGGCUGccaauGCGGc -3' miRNA: 3'- gCCA------------UGCGGUGGU-------GGCUGACu----UGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 33098 | 0.69 | 0.642393 |
Target: 5'- uCGGcAgGCCGCUACCGggguaGCUGAcacccuucgcgcgguACGGGu -3' miRNA: 3'- -GCCaUgCGGUGGUGGC-----UGACU---------------UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 30858 | 0.67 | 0.721276 |
Target: 5'- aCGGcACGCCGcCCGCCGACcc-GCuGGa -3' miRNA: 3'- -GCCaUGCGGU-GGUGGCUGacuUGcCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 30346 | 0.73 | 0.392202 |
Target: 5'- -cGUACcgGCCGCCGCCG-CUGuGGCGGGc -3' miRNA: 3'- gcCAUG--CGGUGGUGGCuGAC-UUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 28826 | 0.69 | 0.617188 |
Target: 5'- aGGUgAUGCCAguuaCGCCGgucACUGAGCGGu -3' miRNA: 3'- gCCA-UGCGGUg---GUGGC---UGACUUGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 28251 | 0.68 | 0.699763 |
Target: 5'- cCGGUGCcgcuGCCGCCGCuCGAUccgccgccgccguUGcccGCGGGg -3' miRNA: 3'- -GCCAUG----CGGUGGUG-GCUG-------------ACu--UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 26825 | 0.71 | 0.52413 |
Target: 5'- aGGUugGCCGgggcgggcUUACCGAg-GAACGGGu -3' miRNA: 3'- gCCAugCGGU--------GGUGGCUgaCUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 25603 | 0.66 | 0.78047 |
Target: 5'- cCGGUACGgCGuCC-CCG-CUGAGCGa- -3' miRNA: 3'- -GCCAUGCgGU-GGuGGCuGACUUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 25301 | 0.68 | 0.666502 |
Target: 5'- gCGGUcgccgccguugccaGCGCCGCCAggGGCcUGAcCGGGg -3' miRNA: 3'- -GCCA--------------UGCGGUGGUggCUG-ACUuGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 25196 | 0.66 | 0.760217 |
Target: 5'- gGGUcCGCgGCCaACCGaggugccgaggagGCUGAGCGaGGu -3' miRNA: 3'- gCCAuGCGgUGG-UGGC-------------UGACUUGC-CC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 22047 | 0.66 | 0.771861 |
Target: 5'- aGG-ACGCCgGCCGCCGACgaagagguccuucccGAugguguACGGGu -3' miRNA: 3'- gCCaUGCGG-UGGUGGCUGa--------------CU------UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 16103 | 0.7 | 0.565022 |
Target: 5'- gCGGcGCGCacaGCCGCCacGGCUGuguCGGGu -3' miRNA: 3'- -GCCaUGCGg--UGGUGG--CUGACuu-GCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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