Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18517 | 5' | -56.3 | NC_004681.1 | + | 61073 | 0.66 | 0.761194 |
Target: 5'- uCGGcACGCUgACCGCCGACcccGAgcuGCGGu -3' miRNA: 3'- -GCCaUGCGG-UGGUGGCUGa--CU---UGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 54366 | 0.68 | 0.700794 |
Target: 5'- gGGcACGCCucGCCACCcaGCUGggUGuGGa -3' miRNA: 3'- gCCaUGCGG--UGGUGGc-UGACuuGC-CC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 12841 | 0.68 | 0.700794 |
Target: 5'- cCGGUACGUCcaGCCugCaGCUGGGuacguCGGGc -3' miRNA: 3'- -GCCAUGCGG--UGGugGcUGACUU-----GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 30858 | 0.67 | 0.721276 |
Target: 5'- aCGGcACGCCGcCCGCCGACcc-GCuGGa -3' miRNA: 3'- -GCCaUGCGGU-GGUGGCUGacuUGcCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 41808 | 0.67 | 0.731401 |
Target: 5'- uGGaagACGCCGCCucCCGGggcauuuccCUGcAGCGGGc -3' miRNA: 3'- gCCa--UGCGGUGGu-GGCU---------GAC-UUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 41056 | 0.67 | 0.731401 |
Target: 5'- aCGGcccucuucgGCGCCGCCGCCGAUgugcucaccGAACGc- -3' miRNA: 3'- -GCCa--------UGCGGUGGUGGCUGa--------CUUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 11793 | 0.67 | 0.741436 |
Target: 5'- uCGGU--GCCAUCACCGA--GGACGGc -3' miRNA: 3'- -GCCAugCGGUGGUGGCUgaCUUGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 68922 | 0.67 | 0.751371 |
Target: 5'- aCGGc-CGCCGCCACCGAagacuucgaguaCgagGAACaGGa -3' miRNA: 3'- -GCCauGCGGUGGUGGCU------------Ga--CUUGcCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 8295 | 0.66 | 0.761194 |
Target: 5'- gCGG-ACGCCGCCAaggaCGGcCUGGACa-- -3' miRNA: 3'- -GCCaUGCGGUGGUg---GCU-GACUUGccc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 45273 | 0.69 | 0.617188 |
Target: 5'- cCGG-ACGCCccGCCcgugACCGGC-GAAUGGGu -3' miRNA: 3'- -GCCaUGCGG--UGG----UGGCUGaCUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 57804 | 0.69 | 0.596231 |
Target: 5'- gCGccGCGCCGCCGaggUGGCgaagGAGCGGGg -3' miRNA: 3'- -GCcaUGCGGUGGUg--GCUGa---CUUGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 44940 | 0.7 | 0.575385 |
Target: 5'- gCGGUGgaGCCGCCACCG-CgagcuCGGGc -3' miRNA: 3'- -GCCAUg-CGGUGGUGGCuGacuu-GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 14221 | 0.79 | 0.17188 |
Target: 5'- aCGGcgcUACGCCGCUACCaGGCUGAgcugacGCGGGc -3' miRNA: 3'- -GCC---AUGCGGUGGUGG-CUGACU------UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 50046 | 0.73 | 0.383623 |
Target: 5'- uCGGcUACGUCuccgacGCCAUCGACUGccuGCGGGu -3' miRNA: 3'- -GCC-AUGCGG------UGGUGGCUGACu--UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 58642 | 0.73 | 0.40973 |
Target: 5'- aGGUguccuGCGCCACgGCCGcCUGcgccGCGGGc -3' miRNA: 3'- gCCA-----UGCGGUGgUGGCuGACu---UGCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 7283 | 0.72 | 0.427737 |
Target: 5'- cCGaGUGCGCCGCCugCGAC-GAGCu-- -3' miRNA: 3'- -GC-CAUGCGGUGGugGCUGaCUUGccc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 69509 | 0.71 | 0.474714 |
Target: 5'- aGGUGCGCCA-CGCCGugUGcucacugcugcGGCGGc -3' miRNA: 3'- gCCAUGCGGUgGUGGCugAC-----------UUGCCc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 47099 | 0.71 | 0.484418 |
Target: 5'- aGGacgaGCCGCCGCCG-CUGAGCGa- -3' miRNA: 3'- gCCaug-CGGUGGUGGCuGACUUGCcc -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 8715 | 0.7 | 0.565022 |
Target: 5'- ---aACGCCGCCGCgGucGCUGAAgcCGGGa -3' miRNA: 3'- gccaUGCGGUGGUGgC--UGACUU--GCCC- -5' |
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18517 | 5' | -56.3 | NC_004681.1 | + | 16103 | 0.7 | 0.565022 |
Target: 5'- gCGGcGCGCacaGCCGCCacGGCUGuguCGGGu -3' miRNA: 3'- -GCCaUGCGg--UGGUGG--CUGACuu-GCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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