miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18517 5' -56.3 NC_004681.1 + 30346 0.73 0.392202
Target:  5'- -cGUACcgGCCGCCGCCG-CUGuGGCGGGc -3'
miRNA:   3'- gcCAUG--CGGUGGUGGCuGAC-UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 9004 0.67 0.731401
Target:  5'- gGGUAC-CCGCCGCCaGCcagGAGCuGGa -3'
miRNA:   3'- gCCAUGcGGUGGUGGcUGa--CUUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 25196 0.66 0.760217
Target:  5'- gGGUcCGCgGCCaACCGaggugccgaggagGCUGAGCGaGGu -3'
miRNA:   3'- gCCAuGCGgUGG-UGGC-------------UGACUUGC-CC- -5'
18517 5' -56.3 NC_004681.1 + 3120 0.66 0.797342
Target:  5'- gGGUGCGggcaUUGCCGCUGGCguagucguaggaGAGCGGGu -3'
miRNA:   3'- gCCAUGC----GGUGGUGGCUGa-----------CUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 50261 0.7 0.575385
Target:  5'- uGG-ACGUCGCUcauuuGCCGACUuGGACGGa -3'
miRNA:   3'- gCCaUGCGGUGG-----UGGCUGA-CUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 2130 0.69 0.610893
Target:  5'- gCGGUGCgGCCGCCcuccacgaccaccugGCCGcgGCcGGAUGGGu -3'
miRNA:   3'- -GCCAUG-CGGUGG---------------UGGC--UGaCUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 70906 0.69 0.617188
Target:  5'- aCGGUgcGCGCUACCGCugaggcuaugCGACUcAACGGa -3'
miRNA:   3'- -GCCA--UGCGGUGGUG----------GCUGAcUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 33098 0.69 0.642393
Target:  5'- uCGGcAgGCCGCUACCGggguaGCUGAcacccuucgcgcgguACGGGu -3'
miRNA:   3'- -GCCaUgCGGUGGUGGC-----UGACU---------------UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 25301 0.68 0.666502
Target:  5'- gCGGUcgccgccguugccaGCGCCGCCAggGGCcUGAcCGGGg -3'
miRNA:   3'- -GCCA--------------UGCGGUGGUggCUG-ACUuGCCC- -5'
18517 5' -56.3 NC_004681.1 + 67517 0.68 0.700794
Target:  5'- gGGUugGCCuugaGCC-ACUGGACGGc -3'
miRNA:   3'- gCCAugCGGugg-UGGcUGACUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 37598 0.68 0.68942
Target:  5'- gGGUgcucugaugcccGCGCCACCAugcaaucCCGGCUGccaauGCGGc -3'
miRNA:   3'- gCCA------------UGCGGUGGU-------GGCUGACu----UGCCc -5'
18517 5' -56.3 NC_004681.1 + 62232 0.68 0.654984
Target:  5'- aGGUACGCCucggggccgaugauGcgcucguCCACCGACUGcAGCaGGa -3'
miRNA:   3'- gCCAUGCGG--------------U-------GGUGGCUGAC-UUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 56315 0.72 0.426826
Target:  5'- uCGGgucgACGCCgguccagGCCACCGACUcAAgGGGc -3'
miRNA:   3'- -GCCa---UGCGG-------UGGUGGCUGAcUUgCCC- -5'
18517 5' -56.3 NC_004681.1 + 28251 0.68 0.699763
Target:  5'- cCGGUGCcgcuGCCGCCGCuCGAUccgccgccgccguUGcccGCGGGg -3'
miRNA:   3'- -GCCAUG----CGGUGGUG-GCUG-------------ACu--UGCCC- -5'
18517 5' -56.3 NC_004681.1 + 26825 0.71 0.52413
Target:  5'- aGGUugGCCGgggcgggcUUACCGAg-GAACGGGu -3'
miRNA:   3'- gCCAugCGGU--------GGUGGCUgaCUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 9434 0.68 0.648691
Target:  5'- cCGGgACGCCccagauguucuuGCCGCCG-UUGAcCGGGu -3'
miRNA:   3'- -GCCaUGCGG------------UGGUGGCuGACUuGCCC- -5'
18517 5' -56.3 NC_004681.1 + 52227 0.68 0.700794
Target:  5'- uGcUugGCCGCCACCuugaGGCU--GCGGGa -3'
miRNA:   3'- gCcAugCGGUGGUGG----CUGAcuUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 63590 0.67 0.741436
Target:  5'- ----gUGCC-CCAUUGugUGGGCGGGg -3'
miRNA:   3'- gccauGCGGuGGUGGCugACUUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 43032 0.7 0.551626
Target:  5'- aCGGUucggcgcagcguucGCaGCCGCCACCGGagUGAGCaGGa -3'
miRNA:   3'- -GCCA--------------UG-CGGUGGUGGCUg-ACUUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 28826 0.69 0.617188
Target:  5'- aGGUgAUGCCAguuaCGCCGgucACUGAGCGGu -3'
miRNA:   3'- gCCA-UGCGGUg---GUGGC---UGACUUGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.