miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18517 5' -56.3 NC_004681.1 + 54366 0.68 0.700794
Target:  5'- gGGcACGCCucGCCACCcaGCUGggUGuGGa -3'
miRNA:   3'- gCCaUGCGG--UGGUGGc-UGACuuGC-CC- -5'
18517 5' -56.3 NC_004681.1 + 39475 0.66 0.799186
Target:  5'- gCGGUGCGCUggcucaagGCCGgUGGCagcGAGgCGGGa -3'
miRNA:   3'- -GCCAUGCGG--------UGGUgGCUGa--CUU-GCCC- -5'
18517 5' -56.3 NC_004681.1 + 10666 0.66 0.770897
Target:  5'- cCGGUGC-CCGCgGCCGucGCgUGcaaGGCGGGa -3'
miRNA:   3'- -GCCAUGcGGUGgUGGC--UG-AC---UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 6265 0.66 0.770897
Target:  5'- cCGGUGuCGCCACC-CCGAacga--GGGc -3'
miRNA:   3'- -GCCAU-GCGGUGGuGGCUgacuugCCC- -5'
18517 5' -56.3 NC_004681.1 + 8295 0.66 0.761194
Target:  5'- gCGG-ACGCCGCCAaggaCGGcCUGGACa-- -3'
miRNA:   3'- -GCCaUGCGGUGGUg---GCU-GACUUGccc -5'
18517 5' -56.3 NC_004681.1 + 61073 0.66 0.761194
Target:  5'- uCGGcACGCUgACCGCCGACcccGAgcuGCGGu -3'
miRNA:   3'- -GCCaUGCGG-UGGUGGCUGa--CU---UGCCc -5'
18517 5' -56.3 NC_004681.1 + 68922 0.67 0.751371
Target:  5'- aCGGc-CGCCGCCACCGAagacuucgaguaCgagGAACaGGa -3'
miRNA:   3'- -GCCauGCGGUGGUGGCU------------Ga--CUUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 11793 0.67 0.741436
Target:  5'- uCGGU--GCCAUCACCGA--GGACGGc -3'
miRNA:   3'- -GCCAugCGGUGGUGGCUgaCUUGCCc -5'
18517 5' -56.3 NC_004681.1 + 41056 0.67 0.731401
Target:  5'- aCGGcccucuucgGCGCCGCCGCCGAUgugcucaccGAACGc- -3'
miRNA:   3'- -GCCa--------UGCGGUGGUGGCUGa--------CUUGCcc -5'
18517 5' -56.3 NC_004681.1 + 41808 0.67 0.731401
Target:  5'- uGGaagACGCCGCCucCCGGggcauuuccCUGcAGCGGGc -3'
miRNA:   3'- gCCa--UGCGGUGGu-GGCU---------GAC-UUGCCC- -5'
18517 5' -56.3 NC_004681.1 + 30858 0.67 0.721276
Target:  5'- aCGGcACGCCGcCCGCCGACcc-GCuGGa -3'
miRNA:   3'- -GCCaUGCGGU-GGUGGCUGacuUGcCC- -5'
18517 5' -56.3 NC_004681.1 + 12841 0.68 0.700794
Target:  5'- cCGGUACGUCcaGCCugCaGCUGGGuacguCGGGc -3'
miRNA:   3'- -GCCAUGCGG--UGGugGcUGACUU-----GCCC- -5'
18517 5' -56.3 NC_004681.1 + 63750 1.11 0.001105
Target:  5'- uCGGUACGCCACCACCGACUGAACGGGg -3'
miRNA:   3'- -GCCAUGCGGUGGUGGCUGACUUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.