miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18518 3' -55.5 NC_004681.1 + 49831 0.66 0.771058
Target:  5'- uGCCGCCGAGGAcaa-GGGCUUUc--- -3'
miRNA:   3'- -UGGCGGCUCCUuaagCUCGAGGucau -5'
18518 3' -55.5 NC_004681.1 + 73197 0.67 0.719729
Target:  5'- gACCGCUGAGGcugUCGAaCUgCAGUc -3'
miRNA:   3'- -UGGCGGCUCCuuaAGCUcGAgGUCAu -5'
18518 3' -55.5 NC_004681.1 + 59367 0.67 0.677078
Target:  5'- aACCGuaGAGGAGUUCcAGCUugCCGGa- -3'
miRNA:   3'- -UGGCggCUCCUUAAGcUCGA--GGUCau -5'
18518 3' -55.5 NC_004681.1 + 50809 0.68 0.661959
Target:  5'- --gGUCGGGGAGUUCGuagauguagccguGCUCCAGg- -3'
miRNA:   3'- uggCGGCUCCUUAAGCu------------CGAGGUCau -5'
18518 3' -55.5 NC_004681.1 + 35490 0.68 0.644616
Target:  5'- cCCGUCGAGGAAUcCG-GCcaCCGGUGg -3'
miRNA:   3'- uGGCGGCUCCUUAaGCuCGa-GGUCAU- -5'
18518 3' -55.5 NC_004681.1 + 17986 0.68 0.644616
Target:  5'- cGCCGCCGcccAGGAAUUCcuucugGAGgucCUCCAGa- -3'
miRNA:   3'- -UGGCGGC---UCCUUAAG------CUC---GAGGUCau -5'
18518 3' -55.5 NC_004681.1 + 11026 0.68 0.644616
Target:  5'- uGCgGgUGGGGAAUg-GAGUUCCAGUAc -3'
miRNA:   3'- -UGgCgGCUCCUUAagCUCGAGGUCAU- -5'
18518 3' -55.5 NC_004681.1 + 15359 0.68 0.622902
Target:  5'- aACCGCCGAGGGuaaggcGUUCGccgacGCcaUCCAGa- -3'
miRNA:   3'- -UGGCGGCUCCU------UAAGCu----CG--AGGUCau -5'
18518 3' -55.5 NC_004681.1 + 26356 0.69 0.558228
Target:  5'- uGCCGCCGAGGAGUcCGucauGCcCCAccgcGUAg -3'
miRNA:   3'- -UGGCGGCUCCUUAaGCu---CGaGGU----CAU- -5'
18518 3' -55.5 NC_004681.1 + 17787 0.7 0.547606
Target:  5'- aACCGUCGAGGcguagUCggGAGCUgCCGGUGa -3'
miRNA:   3'- -UGGCGGCUCCuua--AG--CUCGA-GGUCAU- -5'
18518 3' -55.5 NC_004681.1 + 57571 0.72 0.390203
Target:  5'- cGCCGuaGAGGA---UGAGCUCCAGg- -3'
miRNA:   3'- -UGGCggCUCCUuaaGCUCGAGGUCau -5'
18518 3' -55.5 NC_004681.1 + 18751 0.73 0.355671
Target:  5'- uGCUGCUGAGGGuucuccUCGGGCUUCAGg- -3'
miRNA:   3'- -UGGCGGCUCCUua----AGCUCGAGGUCau -5'
18518 3' -55.5 NC_004681.1 + 62284 0.74 0.300574
Target:  5'- cACCGCCGAGGAGUUCGAcGCgggaUGGa- -3'
miRNA:   3'- -UGGCGGCUCCUUAAGCU-CGag--GUCau -5'
18518 3' -55.5 NC_004681.1 + 64266 1.06 0.002039
Target:  5'- cACCGCCGAGGAAUUCGAGCUCCAGUAc -3'
miRNA:   3'- -UGGCGGCUCCUUAAGCUCGAGGUCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.