Results 1 - 20 of 83 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 21976 | 0.66 | 0.973687 |
Target: 5'- cGCUGUGAUAACCGCGcGUgucccacaUgCCCGAg -3' miRNA: 3'- -CGAUGCUGUUGGUGCuUA--------AgGGGCUg -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 63737 | 0.66 | 0.973687 |
Target: 5'- cGCUACGGCGcCCuCGGuacgccaCCaCCGACu -3' miRNA: 3'- -CGAUGCUGUuGGuGCUuaa----GG-GGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 9148 | 0.66 | 0.973687 |
Target: 5'- cGCcGCGGaGAUCGCGGAgaacgUCUUCGACg -3' miRNA: 3'- -CGaUGCUgUUGGUGCUUa----AGGGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 14771 | 0.66 | 0.973687 |
Target: 5'- ---gUGAC-GCCGCGGAcgCCCUGGCc -3' miRNA: 3'- cgauGCUGuUGGUGCUUaaGGGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 63870 | 0.66 | 0.970699 |
Target: 5'- aGCUACGG--GCCAUGugagCCCCGu- -3' miRNA: 3'- -CGAUGCUguUGGUGCuuaaGGGGCug -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 54862 | 0.66 | 0.970699 |
Target: 5'- gGCUGacgccaagGACGACCGCGGcaacagcUgCCCGACu -3' miRNA: 3'- -CGAUg-------CUGUUGGUGCUua-----AgGGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 8307 | 0.66 | 0.970699 |
Target: 5'- --aAgGACGGCCugGAcaacgacaUCCCCGAg -3' miRNA: 3'- cgaUgCUGUUGGugCUua------AGGGGCUg -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 2845 | 0.66 | 0.970699 |
Target: 5'- cGCUAC-ACggUCACcg--UCCCCGAg -3' miRNA: 3'- -CGAUGcUGuuGGUGcuuaAGGGGCUg -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 45182 | 0.66 | 0.970699 |
Target: 5'- aGCga-GACcGCgGCGAGggCCUCGACc -3' miRNA: 3'- -CGaugCUGuUGgUGCUUaaGGGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 23565 | 0.66 | 0.967475 |
Target: 5'- uCUGCGAUGACCuuGGcggCgCCCGACc -3' miRNA: 3'- cGAUGCUGUUGGugCUuaaG-GGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 35852 | 0.66 | 0.967139 |
Target: 5'- gGCUGgaagugcCGuuACAGCCcCGAA-UCCCUGACa -3' miRNA: 3'- -CGAU-------GC--UGUUGGuGCUUaAGGGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 57901 | 0.66 | 0.966461 |
Target: 5'- uGgaGCGGCGgaaaacggacugguACCAgGAAUaCCUCGACa -3' miRNA: 3'- -CgaUGCUGU--------------UGGUgCUUAaGGGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 12439 | 0.66 | 0.964008 |
Target: 5'- gGCgaagugACGAUcACCGuCGAgg-CCCCGGCc -3' miRNA: 3'- -CGa-----UGCUGuUGGU-GCUuaaGGGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 46426 | 0.66 | 0.964008 |
Target: 5'- aGCUcACc-CAACCGCGcaGGUUCCCgCGGCc -3' miRNA: 3'- -CGA-UGcuGUUGGUGC--UUAAGGG-GCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 17820 | 0.66 | 0.964008 |
Target: 5'- --cGCGGCGGCCGCGcAAggCaCCGGCc -3' miRNA: 3'- cgaUGCUGUUGGUGC-UUaaGgGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 6624 | 0.66 | 0.964008 |
Target: 5'- gGCUucGCGcuGCAACUgGCGGAgaaguaCCCCGACg -3' miRNA: 3'- -CGA--UGC--UGUUGG-UGCUUaa----GGGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 68513 | 0.66 | 0.963648 |
Target: 5'- gGCUcGCGGCAcGCCugGGcgccaugccggugGUucUCCCCGAg -3' miRNA: 3'- -CGA-UGCUGU-UGGugCU-------------UA--AGGGGCUg -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 46914 | 0.66 | 0.960291 |
Target: 5'- gGCUGCGucuCGuagcGCUcCGAguAUUCCUCGACg -3' miRNA: 3'- -CGAUGCu--GU----UGGuGCU--UAAGGGGCUG- -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 44344 | 0.66 | 0.960291 |
Target: 5'- --gGCGACAcacuCCACuucgUCCCCGAg -3' miRNA: 3'- cgaUGCUGUu---GGUGcuuaAGGGGCUg -5' |
|||||||
18518 | 5' | -50.6 | NC_004681.1 | + | 60118 | 0.66 | 0.960291 |
Target: 5'- gGCUguACGGCA---GCGggUUCCCCa-- -3' miRNA: 3'- -CGA--UGCUGUuggUGCuuAAGGGGcug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home