miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18518 5' -50.6 NC_004681.1 + 10522 0.66 0.960291
Target:  5'- gGC-GCGAagucCGACCGCGGAaUCCCgcaGGCg -3'
miRNA:   3'- -CGaUGCU----GUUGGUGCUUaAGGGg--CUG- -5'
18518 5' -50.6 NC_004681.1 + 64585 0.66 0.956316
Target:  5'- ---cCGGCGACCAgGAAUggaCCGGCg -3'
miRNA:   3'- cgauGCUGUUGGUgCUUAaggGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 9148 0.66 0.973687
Target:  5'- cGCcGCGGaGAUCGCGGAgaacgUCUUCGACg -3'
miRNA:   3'- -CGaUGCUgUUGGUGCUUa----AGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 2845 0.66 0.970699
Target:  5'- cGCUAC-ACggUCACcg--UCCCCGAg -3'
miRNA:   3'- -CGAUGcUGuuGGUGcuuaAGGGGCUg -5'
18518 5' -50.6 NC_004681.1 + 21976 0.66 0.973687
Target:  5'- cGCUGUGAUAACCGCGcGUgucccacaUgCCCGAg -3'
miRNA:   3'- -CGAUGCUGUUGGUGCuUA--------AgGGGCUg -5'
18518 5' -50.6 NC_004681.1 + 12439 0.66 0.964008
Target:  5'- gGCgaagugACGAUcACCGuCGAgg-CCCCGGCc -3'
miRNA:   3'- -CGa-----UGCUGuUGGU-GCUuaaGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 51040 0.66 0.955905
Target:  5'- cGCccuCGGCGACgGCGAgaGUuaugaccUCCUCGACg -3'
miRNA:   3'- -CGau-GCUGUUGgUGCU--UA-------AGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 44344 0.66 0.960291
Target:  5'- --gGCGACAcacuCCACuucgUCCCCGAg -3'
miRNA:   3'- cgaUGCUGUu---GGUGcuuaAGGGGCUg -5'
18518 5' -50.6 NC_004681.1 + 60505 0.66 0.960291
Target:  5'- --gGCGGCAAUgGCGGucacaucUUCCCGACc -3'
miRNA:   3'- cgaUGCUGUUGgUGCUua-----AGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 8307 0.66 0.970699
Target:  5'- --aAgGACGGCCugGAcaacgacaUCCCCGAg -3'
miRNA:   3'- cgaUgCUGUUGGugCUua------AGGGGCUg -5'
18518 5' -50.6 NC_004681.1 + 63737 0.66 0.973687
Target:  5'- cGCUACGGCGcCCuCGGuacgccaCCaCCGACu -3'
miRNA:   3'- -CGAUGCUGUuGGuGCUuaa----GG-GGCUG- -5'
18518 5' -50.6 NC_004681.1 + 6624 0.66 0.964008
Target:  5'- gGCUucGCGcuGCAACUgGCGGAgaaguaCCCCGACg -3'
miRNA:   3'- -CGA--UGC--UGUUGG-UGCUUaa----GGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 68513 0.66 0.963648
Target:  5'- gGCUcGCGGCAcGCCugGGcgccaugccggugGUucUCCCCGAg -3'
miRNA:   3'- -CGA-UGCUGU-UGGugCU-------------UA--AGGGGCUg -5'
18518 5' -50.6 NC_004681.1 + 60118 0.66 0.960291
Target:  5'- gGCUguACGGCA---GCGggUUCCCCa-- -3'
miRNA:   3'- -CGA--UGCUGUuggUGCuuAAGGGGcug -5'
18518 5' -50.6 NC_004681.1 + 31393 0.66 0.960291
Target:  5'- gGCUACGGgGcgcGCgACGGAcUgCCCGAUg -3'
miRNA:   3'- -CGAUGCUgU---UGgUGCUUaAgGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 46426 0.66 0.964008
Target:  5'- aGCUcACc-CAACCGCGcaGGUUCCCgCGGCc -3'
miRNA:   3'- -CGA-UGcuGUUGGUGC--UUAAGGG-GCUG- -5'
18518 5' -50.6 NC_004681.1 + 17820 0.66 0.964008
Target:  5'- --cGCGGCGGCCGCGcAAggCaCCGGCc -3'
miRNA:   3'- cgaUGCUGUUGGUGC-UUaaGgGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 57901 0.66 0.966461
Target:  5'- uGgaGCGGCGgaaaacggacugguACCAgGAAUaCCUCGACa -3'
miRNA:   3'- -CgaUGCUGU--------------UGGUgCUUAaGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 14771 0.66 0.973687
Target:  5'- ---gUGAC-GCCGCGGAcgCCCUGGCc -3'
miRNA:   3'- cgauGCUGuUGGUGCUUaaGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 54862 0.66 0.970699
Target:  5'- gGCUGacgccaagGACGACCGCGGcaacagcUgCCCGACu -3'
miRNA:   3'- -CGAUg-------CUGUUGGUGCUua-----AgGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.