miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18518 5' -50.6 NC_004681.1 + 60118 0.66 0.960291
Target:  5'- gGCUguACGGCA---GCGggUUCCCCa-- -3'
miRNA:   3'- -CGA--UGCUGUuggUGCuuAAGGGGcug -5'
18518 5' -50.6 NC_004681.1 + 42499 0.66 0.960291
Target:  5'- gGCUuCGAgccCGACCGCuggcagGAAUgcgcCCCCGGCa -3'
miRNA:   3'- -CGAuGCU---GUUGGUG------CUUAa---GGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 46914 0.66 0.960291
Target:  5'- gGCUGCGucuCGuagcGCUcCGAguAUUCCUCGACg -3'
miRNA:   3'- -CGAUGCu--GU----UGGuGCU--UAAGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 44344 0.66 0.960291
Target:  5'- --gGCGACAcacuCCACuucgUCCCCGAg -3'
miRNA:   3'- cgaUGCUGUu---GGUGcuuaAGGGGCUg -5'
18518 5' -50.6 NC_004681.1 + 64585 0.66 0.956316
Target:  5'- ---cCGGCGACCAgGAAUggaCCGGCg -3'
miRNA:   3'- cgauGCUGUUGGUgCUUAaggGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 10108 0.66 0.956316
Target:  5'- --cACGAUGGCgACGucgUCCUCGACc -3'
miRNA:   3'- cgaUGCUGUUGgUGCuuaAGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 51040 0.66 0.955905
Target:  5'- cGCccuCGGCGACgGCGAgaGUuaugaccUCCUCGACg -3'
miRNA:   3'- -CGau-GCUGUUGgUGCU--UA-------AGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 50860 0.67 0.95208
Target:  5'- --aGCGcCucGCCGcCGAGUaCCCCGACa -3'
miRNA:   3'- cgaUGCuGu-UGGU-GCUUAaGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 55172 0.67 0.947576
Target:  5'- --gGCGA-AGCCAUGGAUcgCCCgCGACg -3'
miRNA:   3'- cgaUGCUgUUGGUGCUUAa-GGG-GCUG- -5'
18518 5' -50.6 NC_004681.1 + 57767 0.67 0.947576
Target:  5'- aGCUucagGCGACAccGCCAcCGGAgaCCgCGACc -3'
miRNA:   3'- -CGA----UGCUGU--UGGU-GCUUaaGGgGCUG- -5'
18518 5' -50.6 NC_004681.1 + 62874 0.67 0.947576
Target:  5'- cGCUACaagaGCGGCCugGAAgagCUCCGcACc -3'
miRNA:   3'- -CGAUGc---UGUUGGugCUUaa-GGGGC-UG- -5'
18518 5' -50.6 NC_004681.1 + 68184 0.67 0.942801
Target:  5'- aGC-AUGAUGAgCGCGAAUUCCCaagaggGGCa -3'
miRNA:   3'- -CGaUGCUGUUgGUGCUUAAGGGg-----CUG- -5'
18518 5' -50.6 NC_004681.1 + 18282 0.67 0.942801
Target:  5'- gGC-GCGGCAcgGCCGCag--UCCUCGACu -3'
miRNA:   3'- -CGaUGCUGU--UGGUGcuuaAGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 42795 0.67 0.942801
Target:  5'- --gGCGaaguGCAACCGCGAAgccgaauaccUUCUCUGGCg -3'
miRNA:   3'- cgaUGC----UGUUGGUGCUU----------AAGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 26811 0.67 0.937751
Target:  5'- --cGCGGCGGCCAacgcUGAcgUCUUCGGCu -3'
miRNA:   3'- cgaUGCUGUUGGU----GCUuaAGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 8905 0.67 0.937751
Target:  5'- aGCUccUGGCuGGCgGCGggUaCCCCGGCg -3'
miRNA:   3'- -CGAu-GCUG-UUGgUGCuuAaGGGGCUG- -5'
18518 5' -50.6 NC_004681.1 + 6885 0.67 0.937751
Target:  5'- cGCUcgACGuCGACCACGGcaugUCCgUGGCc -3'
miRNA:   3'- -CGA--UGCuGUUGGUGCUua--AGGgGCUG- -5'
18518 5' -50.6 NC_004681.1 + 18055 0.67 0.937751
Target:  5'- gGCUGCGGgGcCCAcCGGAgccgCCCuCGGCa -3'
miRNA:   3'- -CGAUGCUgUuGGU-GCUUaa--GGG-GCUG- -5'
18518 5' -50.6 NC_004681.1 + 61654 0.67 0.932425
Target:  5'- aGCUGCGcGCAgaagccgccGCCGCGGAggCCgCCGcCg -3'
miRNA:   3'- -CGAUGC-UGU---------UGGUGCUUaaGG-GGCuG- -5'
18518 5' -50.6 NC_004681.1 + 44682 0.67 0.932425
Target:  5'- -gUGCGGCGGCCGCGAGcgCggCGGCg -3'
miRNA:   3'- cgAUGCUGUUGGUGCUUaaGggGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.