miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18519 5' -54.5 NC_004681.1 + 49791 0.66 0.832426
Target:  5'- gCACCaaGGGCUGCCaCGGCUggaUCGAa -3'
miRNA:   3'- gGUGGacCUUGAUGG-GUCGGa--AGCUa -5'
18519 5' -54.5 NC_004681.1 + 61124 0.66 0.804978
Target:  5'- cUCACUUGuGGAUcGCuCCAGCCUcugcUCGAUg -3'
miRNA:   3'- -GGUGGAC-CUUGaUG-GGUCGGA----AGCUA- -5'
18519 5' -54.5 NC_004681.1 + 1532 0.66 0.795461
Target:  5'- aCC-CCUGGuGACcgGgCCAGCCUUCa-- -3'
miRNA:   3'- -GGuGGACC-UUGa-UgGGUCGGAAGcua -5'
18519 5' -54.5 NC_004681.1 + 42283 0.66 0.795461
Target:  5'- aCgGCCUGGAAgaagGCCCAGC--UCGGg -3'
miRNA:   3'- -GgUGGACCUUga--UGGGUCGgaAGCUa -5'
18519 5' -54.5 NC_004681.1 + 22817 0.67 0.755833
Target:  5'- aUCGCC-GGGGCgACCCcGCCUcCGAUg -3'
miRNA:   3'- -GGUGGaCCUUGaUGGGuCGGAaGCUA- -5'
18519 5' -54.5 NC_004681.1 + 45682 0.67 0.74559
Target:  5'- uCCGCgaGGAACUcaaGCCCcGCCUcgcCGAg -3'
miRNA:   3'- -GGUGgaCCUUGA---UGGGuCGGAa--GCUa -5'
18519 5' -54.5 NC_004681.1 + 37393 0.68 0.703605
Target:  5'- cCCAuCCUGGAGCUgACCCGGCg------ -3'
miRNA:   3'- -GGU-GGACCUUGA-UGGGUCGgaagcua -5'
18519 5' -54.5 NC_004681.1 + 64275 0.69 0.671362
Target:  5'- gCACUUGuagugcGGACUACCCAGCCaUgGAa -3'
miRNA:   3'- gGUGGAC------CUUGAUGGGUCGGaAgCUa -5'
18519 5' -54.5 NC_004681.1 + 62564 0.69 0.62791
Target:  5'- aCCACCgUGGggUcgUGCCCcucGGCCaUUCGGg -3'
miRNA:   3'- -GGUGG-ACCuuG--AUGGG---UCGG-AAGCUa -5'
18519 5' -54.5 NC_004681.1 + 54483 0.71 0.552338
Target:  5'- aCCACCUcGAACUccacACCCAGCUggguggCGAg -3'
miRNA:   3'- -GGUGGAcCUUGA----UGGGUCGGaa----GCUa -5'
18519 5' -54.5 NC_004681.1 + 52734 0.72 0.459824
Target:  5'- -uGCCU-GAACUGCCCGGUCUUCa-- -3'
miRNA:   3'- ggUGGAcCUUGAUGGGUCGGAAGcua -5'
18519 5' -54.5 NC_004681.1 + 32621 0.73 0.402921
Target:  5'- gCCACCaGGAACUcACCCAGCg--CGAUc -3'
miRNA:   3'- -GGUGGaCCUUGA-UGGGUCGgaaGCUA- -5'
18519 5' -54.5 NC_004681.1 + 51661 0.75 0.342462
Target:  5'- uCCACCUcggagaGGAACUGgCCAGCUUgggCGAUg -3'
miRNA:   3'- -GGUGGA------CCUUGAUgGGUCGGAa--GCUA- -5'
18519 5' -54.5 NC_004681.1 + 64729 1.08 0.001867
Target:  5'- cCCACCUGGAACUACCCAGCCUUCGAUg -3'
miRNA:   3'- -GGUGGACCUUGAUGGGUCGGAAGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.