miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18521 3' -53.8 NC_004681.1 + 75674 0.68 0.720277
Target:  5'- aUUGugUgCGUGCUGUGUGUGCGUuguGGCa -3'
miRNA:   3'- -AGUugGaGCGCGACAUACGCGCG---UUG- -5'
18521 3' -53.8 NC_004681.1 + 65070 0.68 0.720277
Target:  5'- cCAACUUCGCGUaGUcGUGCGgGUAGu -3'
miRNA:   3'- aGUUGGAGCGCGaCA-UACGCgCGUUg -5'
18521 3' -53.8 NC_004681.1 + 14440 0.68 0.720277
Target:  5'- -uGGCCUCGa--UGUucuugGCGCGCAGCu -3'
miRNA:   3'- agUUGGAGCgcgACAua---CGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 8975 0.68 0.720277
Target:  5'- cUCGGCCUCuCGCUGUucgGCGC-CAc- -3'
miRNA:   3'- -AGUUGGAGcGCGACAua-CGCGcGUug -5'
18521 3' -53.8 NC_004681.1 + 30055 0.68 0.719212
Target:  5'- aUCGGCCUCGgagcuccCGCUGU---CGCGCAGg -3'
miRNA:   3'- -AGUUGGAGC-------GCGACAuacGCGCGUUg -5'
18521 3' -53.8 NC_004681.1 + 46868 0.68 0.709587
Target:  5'- -uGACCgUGaCGCcGUGcGCGCGCAGCg -3'
miRNA:   3'- agUUGGaGC-GCGaCAUaCGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 61357 0.69 0.698821
Target:  5'- aUCGGCC-CGuCGCUGcg-GUGgGCAACa -3'
miRNA:   3'- -AGUUGGaGC-GCGACauaCGCgCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 61762 0.69 0.689076
Target:  5'- gCGGCCUC-CGCggcggcggcuucUGCGCGCAGCu -3'
miRNA:   3'- aGUUGGAGcGCGacau--------ACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 17441 0.69 0.686904
Target:  5'- -aGACCUugagucaggucgcCGCGCUGauccUGCGUGUAGCg -3'
miRNA:   3'- agUUGGA-------------GCGCGACau--ACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 7501 0.69 0.677107
Target:  5'- gUCGauGCCUgG-GcCUGgGUGCGCGCGACg -3'
miRNA:   3'- -AGU--UGGAgCgC-GACaUACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 39214 0.71 0.589374
Target:  5'- gUCAGCCUgGuCGaCUGUcagcucaccGUGCGCcGCGGCa -3'
miRNA:   3'- -AGUUGGAgC-GC-GACA---------UACGCG-CGUUG- -5'
18521 3' -53.8 NC_004681.1 + 29825 0.71 0.55681
Target:  5'- cUCGAaagCGCGCgUGUAucagcUGCGCGCGGCc -3'
miRNA:   3'- -AGUUggaGCGCG-ACAU-----ACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 47171 0.71 0.55681
Target:  5'- aCAACCUCGaCGCcaagGUGgugGCGgGCAAg -3'
miRNA:   3'- aGUUGGAGC-GCGa---CAUa--CGCgCGUUg -5'
18521 3' -53.8 NC_004681.1 + 8806 0.72 0.493479
Target:  5'- gCGACCgcggCgGCGUUGU-UGUGCGCAGCc -3'
miRNA:   3'- aGUUGGa---G-CGCGACAuACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 66077 1.11 0.00128
Target:  5'- aUCAACCUCGCGCUGUAUGCGCGCAACg -3'
miRNA:   3'- -AGUUGGAGCGCGACAUACGCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.