miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18521 5' -52.8 NC_004681.1 + 59685 0.66 0.905916
Target:  5'- -gGCaGCGCcgccacgcccccUGCugGGAGUGCGGCc- -3'
miRNA:   3'- gaCGaCGUG------------ACGugCUUCACGUUGcc -5'
18521 5' -52.8 NC_004681.1 + 35610 0.66 0.899126
Target:  5'- gUGCgcgccgaGUACUGCAucugcgggugguCGGAGgaagGCGACGGc -3'
miRNA:   3'- gACGa------CGUGACGU------------GCUUCa---CGUUGCC- -5'
18521 5' -52.8 NC_004681.1 + 64917 0.66 0.899126
Target:  5'- -cGCgGCGCccgccuggaGCACGAGGUGgCGACGc -3'
miRNA:   3'- gaCGaCGUGa--------CGUGCUUCAC-GUUGCc -5'
18521 5' -52.8 NC_004681.1 + 5673 0.66 0.892069
Target:  5'- aCUGUUGCGCuUGaugGCGAcccgugacgGGUGCAuCGGc -3'
miRNA:   3'- -GACGACGUG-ACg--UGCU---------UCACGUuGCC- -5'
18521 5' -52.8 NC_004681.1 + 32929 0.67 0.869333
Target:  5'- -cGCUGCGCaucGCcUGAAGgacuucaucgGCGGCGGg -3'
miRNA:   3'- gaCGACGUGa--CGuGCUUCa---------CGUUGCC- -5'
18521 5' -52.8 NC_004681.1 + 12900 0.67 0.852935
Target:  5'- gUGCUGCAgCUGCGuCGGucgccGUGagAACGGa -3'
miRNA:   3'- gACGACGU-GACGU-GCUu----CACg-UUGCC- -5'
18521 5' -52.8 NC_004681.1 + 49020 0.67 0.85209
Target:  5'- uUGCgGCGCUGCugGAuGGUcuuguacGgGACGGu -3'
miRNA:   3'- gACGaCGUGACGugCU-UCA-------CgUUGCC- -5'
18521 5' -52.8 NC_004681.1 + 13002 0.67 0.844384
Target:  5'- -gGCUGguCgGCACGAAGccgGUGugGGu -3'
miRNA:   3'- gaCGACguGaCGUGCUUCa--CGUugCC- -5'
18521 5' -52.8 NC_004681.1 + 9555 0.67 0.826623
Target:  5'- -aGCUGauccaGCUGaa-GAagGGUGCGACGGg -3'
miRNA:   3'- gaCGACg----UGACgugCU--UCACGUUGCC- -5'
18521 5' -52.8 NC_004681.1 + 41663 0.67 0.826623
Target:  5'- cCUGCggggugGCGCUGCAUGgcGgccGCGauuugcuuGCGGa -3'
miRNA:   3'- -GACGa-----CGUGACGUGCuuCa--CGU--------UGCC- -5'
18521 5' -52.8 NC_004681.1 + 42135 0.68 0.795567
Target:  5'- -cGCUGCACUgcucagguuggcgcGCACGAGGUugGCGuCGa -3'
miRNA:   3'- gaCGACGUGA--------------CGUGCUUCA--CGUuGCc -5'
18521 5' -52.8 NC_004681.1 + 39933 0.68 0.788728
Target:  5'- -cGCggGCGCggUGCGCGcGGUGCGguccACGGu -3'
miRNA:   3'- gaCGa-CGUG--ACGUGCuUCACGU----UGCC- -5'
18521 5' -52.8 NC_004681.1 + 42428 0.69 0.737778
Target:  5'- uUGgaGCGCUGCGCGuGGgcgGgGAUGGu -3'
miRNA:   3'- gACgaCGUGACGUGCuUCa--CgUUGCC- -5'
18521 5' -52.8 NC_004681.1 + 60174 0.7 0.70584
Target:  5'- gCUGCUgGUGCUgaGCGCGAGGUGau-CGGc -3'
miRNA:   3'- -GACGA-CGUGA--CGUGCUUCACguuGCC- -5'
18521 5' -52.8 NC_004681.1 + 23171 0.7 0.70584
Target:  5'- uCUGCUGCuggucCUGCGCGcGAuUGCgGGCGGg -3'
miRNA:   3'- -GACGACGu----GACGUGC-UUcACG-UUGCC- -5'
18521 5' -52.8 NC_004681.1 + 46597 0.7 0.695035
Target:  5'- uCUGCUGCACgGCACGAauccAGUcGUccuccuCGGg -3'
miRNA:   3'- -GACGACGUGaCGUGCU----UCA-CGuu----GCC- -5'
18521 5' -52.8 NC_004681.1 + 73188 0.7 0.673252
Target:  5'- -gGCUGUcgaACUGCAguCGGAGUGCcagacguGCGGu -3'
miRNA:   3'- gaCGACG---UGACGU--GCUUCACGu------UGCC- -5'
18521 5' -52.8 NC_004681.1 + 20633 0.72 0.596334
Target:  5'- uUGCUGCGuuguacggguCUGCGCGGAggcGUGCGugGa -3'
miRNA:   3'- gACGACGU----------GACGUGCUU---CACGUugCc -5'
18521 5' -52.8 NC_004681.1 + 53832 0.72 0.57449
Target:  5'- aCUGCgGCACUccggugaggaugGCgACGAGGUcgGCGACGGu -3'
miRNA:   3'- -GACGaCGUGA------------CG-UGCUUCA--CGUUGCC- -5'
18521 5' -52.8 NC_004681.1 + 41049 0.73 0.542098
Target:  5'- aUGCUGCagauGCUGCugGAGGa--GACGGa -3'
miRNA:   3'- gACGACG----UGACGugCUUCacgUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.