miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18522 3' -59.7 NC_004681.1 + 16670 0.66 0.567771
Target:  5'- -cCGGGGGCuuGUagcgcuCGUCGGCaagCUGCAu -3'
miRNA:   3'- uaGCCCCUGu-CAgu----GCAGCCG---GACGU- -5'
18522 3' -59.7 NC_004681.1 + 58533 0.66 0.567771
Target:  5'- -gUGGGcGcCGGUCuugGCGUCGGCC-GCGg -3'
miRNA:   3'- uaGCCC-CuGUCAG---UGCAGCCGGaCGU- -5'
18522 3' -59.7 NC_004681.1 + 23628 0.66 0.567771
Target:  5'- -cCGGGGGCAaUCACGaugaCGuCCUGCGg -3'
miRNA:   3'- uaGCCCCUGUcAGUGCa---GCcGGACGU- -5'
18522 3' -59.7 NC_004681.1 + 25203 0.66 0.557415
Target:  5'- -gCGGGGugGGUC-CG-CGGCCa--- -3'
miRNA:   3'- uaGCCCCugUCAGuGCaGCCGGacgu -5'
18522 3' -59.7 NC_004681.1 + 65079 0.66 0.536874
Target:  5'- cUCGGGu--GGUCGCcgagGUCGGCCUGgCAa -3'
miRNA:   3'- uAGCCCcugUCAGUG----CAGCCGGAC-GU- -5'
18522 3' -59.7 NC_004681.1 + 50412 0.67 0.516602
Target:  5'- cUCGGGGguGCccaugAGUUcaGCGUCGGCC-GCGg -3'
miRNA:   3'- uAGCCCC--UG-----UCAG--UGCAGCCGGaCGU- -5'
18522 3' -59.7 NC_004681.1 + 40159 0.67 0.50658
Target:  5'- gAUCuGGGugc-UgGCGUCGGCCUGCGg -3'
miRNA:   3'- -UAGcCCCugucAgUGCAGCCGGACGU- -5'
18522 3' -59.7 NC_004681.1 + 44694 0.67 0.496643
Target:  5'- -aCGGGGugAGUaguGCGgCGGCC-GCGa -3'
miRNA:   3'- uaGCCCCugUCAg--UGCaGCCGGaCGU- -5'
18522 3' -59.7 NC_004681.1 + 38896 0.67 0.486795
Target:  5'- cUCGGcGGACuugCGCG-CGGCCcGCAg -3'
miRNA:   3'- uAGCC-CCUGucaGUGCaGCCGGaCGU- -5'
18522 3' -59.7 NC_004681.1 + 54838 0.67 0.467383
Target:  5'- cUCGGGGGCcuGGUCAuCGUCGGagaCguaGCGc -3'
miRNA:   3'- uAGCCCCUG--UCAGU-GCAGCCg--Ga--CGU- -5'
18522 3' -59.7 NC_004681.1 + 6566 0.68 0.457827
Target:  5'- gGUCGGGGAUAGUCcCGgcaccgaGGCggGCGg -3'
miRNA:   3'- -UAGCCCCUGUCAGuGCag-----CCGgaCGU- -5'
18522 3' -59.7 NC_004681.1 + 10007 0.68 0.457827
Target:  5'- uUCGGGGAag---GCGUCGGCCaGCu -3'
miRNA:   3'- uAGCCCCUgucagUGCAGCCGGaCGu -5'
18522 3' -59.7 NC_004681.1 + 47125 0.7 0.324051
Target:  5'- cGUCGGGGuCGGgcuCGUCgguggggauggucagGGCCUGCAa -3'
miRNA:   3'- -UAGCCCCuGUCaguGCAG---------------CCGGACGU- -5'
18522 3' -59.7 NC_004681.1 + 25685 0.75 0.155296
Target:  5'- -gCGGGGcCAG--GCGUCGGCCUGUAc -3'
miRNA:   3'- uaGCCCCuGUCagUGCAGCCGGACGU- -5'
18522 3' -59.7 NC_004681.1 + 66975 1.06 0.000894
Target:  5'- cAUCGGGGACAGUCACGUCGGCCUGCAc -3'
miRNA:   3'- -UAGCCCCUGUCAGUGCAGCCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.