Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18523 | 3' | -53.7 | NC_004681.1 | + | 29718 | 0.7 | 0.672626 |
|
Target: 5'- gGUCGAcguCGAGCCAUCAGaGuucagcaGAGCGUa -3' miRNA: 3'- gUAGCUu--GUUCGGUAGUC-Cc------CUCGCG- -5' |
|||||||
| 18523 | 3' | -53.7 | NC_004681.1 | + | 12316 | 0.72 | 0.542506 |
|
Target: 5'- ---aGAACGGGCCAcCGGGGaugcGGCGCg -3' miRNA: 3'- guagCUUGUUCGGUaGUCCCc---UCGCG- -5' |
|||||||
| 18523 | 3' | -53.7 | NC_004681.1 | + | 18592 | 0.72 | 0.510983 |
|
Target: 5'- gUAUCGGcaacauCAAGCCcgCGGGGGAGaacacCGCu -3' miRNA: 3'- -GUAGCUu-----GUUCGGuaGUCCCCUC-----GCG- -5' |
|||||||
| 18523 | 3' | -53.7 | NC_004681.1 | + | 28993 | 0.73 | 0.459277 |
|
Target: 5'- cCGUCGAacggcguugccuuGCAGGUgGUUucaucagguaGGGGGAGCGCc -3' miRNA: 3'- -GUAGCU-------------UGUUCGgUAG----------UCCCCUCGCG- -5' |
|||||||
| 18523 | 3' | -53.7 | NC_004681.1 | + | 32216 | 0.74 | 0.412341 |
|
Target: 5'- gGUgGAGCAGGCCAUCgcAGcGGcAGCGCg -3' miRNA: 3'- gUAgCUUGUUCGGUAG--UC-CCcUCGCG- -5' |
|||||||
| 18523 | 3' | -53.7 | NC_004681.1 | + | 56775 | 0.78 | 0.247983 |
|
Target: 5'- --aCGAugAAGCCuUCGGGGauGAGCGCa -3' miRNA: 3'- guaGCUugUUCGGuAGUCCC--CUCGCG- -5' |
|||||||
| 18523 | 3' | -53.7 | NC_004681.1 | + | 64120 | 0.79 | 0.223598 |
|
Target: 5'- ---gGGACugAGGCUGUCAGGGGAGCGUc -3' miRNA: 3'- guagCUUG--UUCGGUAGUCCCCUCGCG- -5' |
|||||||
| 18523 | 3' | -53.7 | NC_004681.1 | + | 67457 | 1.13 | 0.001173 |
|
Target: 5'- cCAUCGAACAAGCCAUCAGGGGAGCGCg -3' miRNA: 3'- -GUAGCUUGUUCGGUAGUCCCCUCGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home