Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18523 | 5' | -53.9 | NC_004681.1 | + | 1595 | 0.68 | 0.769561 |
Target: 5'- gGGACGAgua--UugGGCCauggugGUUGCGCa -3' miRNA: 3'- -CCUGCUaagacAugCCGGa-----CGACGCG- -5' |
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18523 | 5' | -53.9 | NC_004681.1 | + | 19777 | 0.69 | 0.743265 |
Target: 5'- uGGACGcUggUGUgcggcuccgcuaagaACGGCCgccaguaccgcgUGCUGCGCg -3' miRNA: 3'- -CCUGCuAagACA---------------UGCCGG------------ACGACGCG- -5' |
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18523 | 5' | -53.9 | NC_004681.1 | + | 8918 | 0.69 | 0.692933 |
Target: 5'- cGGCGGguaccccggcGUcaACGGCCUGCUGCaGCg -3' miRNA: 3'- cCUGCUaaga------CA--UGCCGGACGACG-CG- -5' |
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18523 | 5' | -53.9 | NC_004681.1 | + | 49627 | 0.7 | 0.65426 |
Target: 5'- aGGGCGAUgucggcacccUUGUcgaccAUGGCCUgGUUGCGCa -3' miRNA: 3'- -CCUGCUAa---------GACA-----UGCCGGA-CGACGCG- -5' |
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18523 | 5' | -53.9 | NC_004681.1 | + | 39893 | 0.7 | 0.643452 |
Target: 5'- cGGGCGGagacccccagCgc-GCGGCCaGCUGCGCa -3' miRNA: 3'- -CCUGCUaa--------GacaUGCCGGaCGACGCG- -5' |
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18523 | 5' | -53.9 | NC_004681.1 | + | 24005 | 0.71 | 0.568029 |
Target: 5'- uGACGAUUgUGUcgagcAUGGCCUGgaUGCGUc -3' miRNA: 3'- cCUGCUAAgACA-----UGCCGGACg-ACGCG- -5' |
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18523 | 5' | -53.9 | NC_004681.1 | + | 52853 | 0.73 | 0.495008 |
Target: 5'- cGGGCGGaaggCUGgccauCGGCCUGCccGCGUg -3' miRNA: 3'- -CCUGCUaa--GACau---GCCGGACGa-CGCG- -5' |
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18523 | 5' | -53.9 | NC_004681.1 | + | 4235 | 0.76 | 0.355641 |
Target: 5'- cGAUGGggUUGUugcgggccucaGCGGCCUGCuUGCGCa -3' miRNA: 3'- cCUGCUaaGACA-----------UGCCGGACG-ACGCG- -5' |
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18523 | 5' | -53.9 | NC_004681.1 | + | 67491 | 1.15 | 0.000886 |
Target: 5'- gGGACGAUUCUGUACGGCCUGCUGCGCg -3' miRNA: 3'- -CCUGCUAAGACAUGCCGGACGACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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