miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 3' -53 NC_004681.1 + 44980 0.67 0.838574
Target:  5'- gAGCCCUGCUGcauccucggccucguGGGCGuCGcccgcuUCGGCa -3'
miRNA:   3'- gUCGGGAUGACuu-------------CUUGCuGC------AGCCG- -5'
18524 3' -53 NC_004681.1 + 58261 0.68 0.832426
Target:  5'- uGGCCUcACcGAAGAcgaGCGACGUCaGUu -3'
miRNA:   3'- gUCGGGaUGaCUUCU---UGCUGCAGcCG- -5'
18524 3' -53 NC_004681.1 + 20387 0.68 0.815241
Target:  5'- cCAGCUuucaaaCUGCUGcAGGAGCGGCGggacguuguuguucgUGGCg -3'
miRNA:   3'- -GUCGG------GAUGAC-UUCUUGCUGCa--------------GCCG- -5'
18524 3' -53 NC_004681.1 + 27978 0.68 0.814318
Target:  5'- -uGCUCU-CUGGAGccAACGGCGgcaaCGGCg -3'
miRNA:   3'- guCGGGAuGACUUC--UUGCUGCa---GCCG- -5'
18524 3' -53 NC_004681.1 + 40169 0.68 0.814318
Target:  5'- cCAGCCUgucgauCUGGGu-GCuGGCGUCGGCc -3'
miRNA:   3'- -GUCGGGau----GACUUcuUG-CUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 7421 0.68 0.804978
Target:  5'- uCAGCCCcgggUGCcGggGGugGAaCGUCgcuGGCg -3'
miRNA:   3'- -GUCGGG----AUGaCuuCUugCU-GCAG---CCG- -5'
18524 3' -53 NC_004681.1 + 45216 0.68 0.804978
Target:  5'- gUAGaCCUGCgc---GACGGCGUCGGCc -3'
miRNA:   3'- -GUCgGGAUGacuucUUGCUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 15050 0.68 0.795461
Target:  5'- gAGCCCaugaGCUGGucGAugGGCGccUUGGCg -3'
miRNA:   3'- gUCGGGa---UGACUu-CUugCUGC--AGCCG- -5'
18524 3' -53 NC_004681.1 + 28125 0.69 0.785777
Target:  5'- aCGGCCCcGC-GGGcAACGGCGgCGGCg -3'
miRNA:   3'- -GUCGGGaUGaCUUcUUGCUGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 5788 0.69 0.755833
Target:  5'- cCAGCCCgucagggUUGAAGAagcggaucggcACGAccucguCGUCGGCg -3'
miRNA:   3'- -GUCGGGau-----GACUUCU-----------UGCU------GCAGCCG- -5'
18524 3' -53 NC_004681.1 + 40607 0.69 0.74559
Target:  5'- aAGCCU---UGAAGGGCGACGUugaUGGUg -3'
miRNA:   3'- gUCGGGaugACUUCUUGCUGCA---GCCG- -5'
18524 3' -53 NC_004681.1 + 17298 0.7 0.738353
Target:  5'- -cGCCCUGCUGGcgcgcgugcccgcGGGACGcuacacgcaggaucaGCG-CGGCg -3'
miRNA:   3'- guCGGGAUGACU-------------UCUUGC---------------UGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 51110 0.7 0.735235
Target:  5'- -cGCCCUugUgGAAGAGCuccccGACGUCGacGCc -3'
miRNA:   3'- guCGGGAugA-CUUCUUG-----CUGCAGC--CG- -5'
18524 3' -53 NC_004681.1 + 22637 0.7 0.714231
Target:  5'- uGGCCUcgucgUACUGGAGGAUGAaucCGUCuGCg -3'
miRNA:   3'- gUCGGG-----AUGACUUCUUGCU---GCAGcCG- -5'
18524 3' -53 NC_004681.1 + 15196 0.7 0.703605
Target:  5'- -uGUCCaagcaGCUGAAGGACcccaACGUCGGCc -3'
miRNA:   3'- guCGGGa----UGACUUCUUGc---UGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 50131 0.7 0.68216
Target:  5'- -cGCCCUcGCUGAcGAcgGCGGCaucuccguccaaGUCGGCa -3'
miRNA:   3'- guCGGGA-UGACUuCU--UGCUG------------CAGCCG- -5'
18524 3' -53 NC_004681.1 + 1414 0.71 0.671362
Target:  5'- gCAGCCCUugUcGgcGAG-GuCGUCGGCc -3'
miRNA:   3'- -GUCGGGAugA-CuuCUUgCuGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 45515 0.72 0.573738
Target:  5'- --cCCCUACUacAAGGGCGACGaCGGCg -3'
miRNA:   3'- gucGGGAUGAc-UUCUUGCUGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 27781 0.72 0.573738
Target:  5'- gCGGCgCUAaggugcucacuuCUGGAGAugGGCG-CGGCg -3'
miRNA:   3'- -GUCGgGAU------------GACUUCUugCUGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 14572 0.73 0.563011
Target:  5'- -cGCCCUGCUcggcGGAG-GCGGCGcgcgCGGCg -3'
miRNA:   3'- guCGGGAUGA----CUUCuUGCUGCa---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.