miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 5' -62.5 NC_004681.1 + 49037 0.68 0.318537
Target:  5'- uGGCUGCccgguucuucuugcGGCGCUGCUGgAUGGUCu -3'
miRNA:   3'- cCCGGCGa-------------CCGCGAUGGCgUACCGGu -5'
18524 5' -62.5 NC_004681.1 + 49420 0.67 0.386423
Target:  5'- aGGCCGaCUGGaauCGggACUGCAccGGCCAg -3'
miRNA:   3'- cCCGGC-GACC---GCgaUGGCGUa-CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 52314 0.68 0.32297
Target:  5'- aGGUCGgggaUGGCGggGCCGUucuUGGCCGu -3'
miRNA:   3'- cCCGGCg---ACCGCgaUGGCGu--ACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 52965 0.69 0.261267
Target:  5'- cGGGCaCGCgGGCag-GCCG-AUGGCCAg -3'
miRNA:   3'- -CCCG-GCGaCCGcgaUGGCgUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 59779 0.67 0.378056
Target:  5'- gGGGgCGUggcGGCGCUGCCauguUGGCUg -3'
miRNA:   3'- -CCCgGCGa--CCGCGAUGGcgu-ACCGGu -5'
18524 5' -62.5 NC_004681.1 + 60172 0.7 0.242944
Target:  5'- aGGCUGCUGGUGCUGagCGCGaGGUg- -3'
miRNA:   3'- cCCGGCGACCGCGAUg-GCGUaCCGgu -5'
18524 5' -62.5 NC_004681.1 + 60569 0.7 0.219646
Target:  5'- cGGGCCGCUGGCcgacgaacgugguGCUcgacgaggccGCCGCugcGGCa- -3'
miRNA:   3'- -CCCGGCGACCG-------------CGA----------UGGCGua-CCGgu -5'
18524 5' -62.5 NC_004681.1 + 61741 0.66 0.42109
Target:  5'- aGGCCGCccucGCGCgccaccagACCGCGgccgccaucGGCCAg -3'
miRNA:   3'- cCCGGCGac--CGCGa-------UGGCGUa--------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 62623 0.66 0.403522
Target:  5'- cGGuGUCGgaGGCgGCUGCCagggugccCAUGGCCu -3'
miRNA:   3'- -CC-CGGCgaCCG-CGAUGGc-------GUACCGGu -5'
18524 5' -62.5 NC_004681.1 + 67132 0.68 0.331216
Target:  5'- uGG-UGCUGGagauggugccagugaGCUugCGCAUGGCCu -3'
miRNA:   3'- cCCgGCGACCg--------------CGAugGCGUACCGGu -5'
18524 5' -62.5 NC_004681.1 + 67712 1.1 0.000246
Target:  5'- aGGGCCGCUGGCGCUACCGCAUGGCCAa -3'
miRNA:   3'- -CCCGGCGACCGCGAUGGCGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 69864 0.66 0.403522
Target:  5'- cGGCCGCUGGCaaacCUACUugGCGguagGGUUAg -3'
miRNA:   3'- cCCGGCGACCGc---GAUGG--CGUa---CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 70474 0.66 0.439112
Target:  5'- cGGCCGC--GCGUagacgucaGCCGUAUGGUCAc -3'
miRNA:   3'- cCCGGCGacCGCGa-------UGGCGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 70932 0.66 0.398342
Target:  5'- cGGCCGCugagcguggagaccgUGacacggugcGCGCUACCGCugaGGCUAu -3'
miRNA:   3'- cCCGGCG---------------AC---------CGCGAUGGCGua-CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.