miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 5' -62.5 NC_004681.1 + 39209 0.7 0.225703
Target:  5'- cGGUCGCggaaGGUGUUGcCCGCgcagGUGGCCAc -3'
miRNA:   3'- cCCGGCGa---CCGCGAU-GGCG----UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 38898 0.68 0.315607
Target:  5'- aGGCCagccuGCUGGCGUgggucaAUC-CAUGGCCAg -3'
miRNA:   3'- cCCGG-----CGACCGCGa-----UGGcGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 38330 0.71 0.214794
Target:  5'- cGGuGCCuaUGGCGCcGCCGCGggacgucuucGGCCGc -3'
miRNA:   3'- -CC-CGGcgACCGCGaUGGCGUa---------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 37757 0.7 0.231332
Target:  5'- cGGCCGCUGGCGaggccCCGCAgaaGUCGg -3'
miRNA:   3'- cCCGGCGACCGCgau--GGCGUac-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 37160 0.66 0.398342
Target:  5'- aGGCCGCUGGgaugaGCcACCccaucaccgacccugGCgAUGGCCGg -3'
miRNA:   3'- cCCGGCGACCg----CGaUGG---------------CG-UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 36369 0.7 0.237078
Target:  5'- cGGGUgGgUGGCGC-ACUGCgaagaccucccaGUGGCCGa -3'
miRNA:   3'- -CCCGgCgACCGCGaUGGCG------------UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 33373 0.72 0.184751
Target:  5'- cGGCCGCgucGCGCgcGCCGUGUGGCa- -3'
miRNA:   3'- cCCGGCGac-CGCGa-UGGCGUACCGgu -5'
18524 5' -62.5 NC_004681.1 + 32337 0.69 0.267621
Target:  5'- cGGGCUagacacgagGCc-GCGCUGCCGCugcgAUGGCCu -3'
miRNA:   3'- -CCCGG---------CGacCGCGAUGGCG----UACCGGu -5'
18524 5' -62.5 NC_004681.1 + 32230 0.66 0.394913
Target:  5'- uGGUCGUUGGCGUggGCCGCcgcGGUg- -3'
miRNA:   3'- cCCGGCGACCGCGa-UGGCGua-CCGgu -5'
18524 5' -62.5 NC_004681.1 + 30152 0.67 0.386423
Target:  5'- cGGGCUcagGC-GGCGCgGCCGCggaGUGGaCCu -3'
miRNA:   3'- -CCCGG---CGaCCGCGaUGGCG---UACC-GGu -5'
18524 5' -62.5 NC_004681.1 + 24782 0.71 0.213197
Target:  5'- -cGCuCGCUGGCGCcacggaaauucccaUGcCCGCAUgGGCCAa -3'
miRNA:   3'- ccCG-GCGACCGCG--------------AU-GGCGUA-CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 22908 0.68 0.315607
Target:  5'- gGGGUCGCcccGGCGaUGCCGUAguagcGGCCc -3'
miRNA:   3'- -CCCGGCGa--CCGCgAUGGCGUa----CCGGu -5'
18524 5' -62.5 NC_004681.1 + 22279 0.66 0.412248
Target:  5'- uGGCgGCgugGGCGCccugcCCGuCAUGGCgCAg -3'
miRNA:   3'- cCCGgCGa--CCGCGau---GGC-GUACCG-GU- -5'
18524 5' -62.5 NC_004681.1 + 20009 0.68 0.299156
Target:  5'- cGGGCacUUGGCGCUgucgaACCGCggagaccaggacggGUGGCCGc -3'
miRNA:   3'- -CCCGgcGACCGCGA-----UGGCG--------------UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 18155 0.68 0.315607
Target:  5'- cGGGacaaucggaagaCCGC-GGCGCUGCCGUGaGGCg- -3'
miRNA:   3'- -CCC------------GGCGaCCGCGAUGGCGUaCCGgu -5'
18524 5' -62.5 NC_004681.1 + 16327 0.66 0.412248
Target:  5'- cGGGUCGUUGGgauuucCGCcgAagGCGUGGCCGu -3'
miRNA:   3'- -CCCGGCGACC------GCGa-UggCGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 16196 0.68 0.32297
Target:  5'- uGGCgGCUGuGCGC-GCCGCgGUGGUg- -3'
miRNA:   3'- cCCGgCGAC-CGCGaUGGCG-UACCGgu -5'
18524 5' -62.5 NC_004681.1 + 16026 0.68 0.33046
Target:  5'- cGGCUGCUGGCaagggcgccgccGCUgucACCGCAUccGCCGc -3'
miRNA:   3'- cCCGGCGACCG------------CGA---UGGCGUAc-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 15889 0.66 0.394912
Target:  5'- cGGCCGCgUGG-GUcACCGUgaagaucgccGUGGCCGc -3'
miRNA:   3'- cCCGGCG-ACCgCGaUGGCG----------UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 15756 0.69 0.274098
Target:  5'- -cGCCGUUGGCGU--CUGCGUGaGCCu -3'
miRNA:   3'- ccCGGCGACCGCGauGGCGUAC-CGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.