Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18524 | 5' | -62.5 | NC_004681.1 | + | 14897 | 0.71 | 0.19433 |
Target: 5'- cGGGCCaGCUgGGCGCcaGCCuucaGgAUGGCCAg -3' miRNA: 3'- -CCCGG-CGA-CCGCGa-UGG----CgUACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 40481 | 0.72 | 0.16684 |
Target: 5'- cGGCCacGCUGGCGgUGCCGCucuugcUGGCg- -3' miRNA: 3'- cCCGG--CGACCGCgAUGGCGu-----ACCGgu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 7462 | 0.67 | 0.369811 |
Target: 5'- cGGCCGCgGGCuuggcgggagGCUucGCCGCGgcggcggGGUCAg -3' miRNA: 3'- cCCGGCGaCCG----------CGA--UGGCGUa------CCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 9400 | 0.66 | 0.44277 |
Target: 5'- cGGGuuGCcguaGGCGUUGCCGaagaaGuugccgcccauguacUGGCCAu -3' miRNA: 3'- -CCCggCGa---CCGCGAUGGCg----U---------------ACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 59779 | 0.67 | 0.378056 |
Target: 5'- gGGGgCGUggcGGCGCUGCCauguUGGCUg -3' miRNA: 3'- -CCCgGCGa--CCGCGAUGGcgu-ACCGGu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 11960 | 0.66 | 0.412248 |
Target: 5'- cGGuaCGCUGcGCGC-GCCGCGacuGCCAa -3' miRNA: 3'- -CCcgGCGAC-CGCGaUGGCGUac-CGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 5371 | 0.66 | 0.436381 |
Target: 5'- -uGCCGCcguagagcgagaauUGGCGCUccaACUGCAUGcCCAc -3' miRNA: 3'- ccCGGCG--------------ACCGCGA---UGGCGUACcGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 32230 | 0.66 | 0.394913 |
Target: 5'- uGGUCGUUGGCGUggGCCGCcgcGGUg- -3' miRNA: 3'- cCCGGCGACCGCGa-UGGCGua-CCGgu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 69864 | 0.66 | 0.403522 |
Target: 5'- cGGCCGCUGGCaaacCUACUugGCGguagGGUUAg -3' miRNA: 3'- cCCGGCGACCGc---GAUGG--CGUa---CCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 48309 | 0.66 | 0.42109 |
Target: 5'- aGGGCCaGCUuguaGGCGC-GCUuCuUGGCCAg -3' miRNA: 3'- -CCCGG-CGA----CCGCGaUGGcGuACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 3048 | 0.67 | 0.361689 |
Target: 5'- gGGGUccuCGCUGGUGaacucgGCgCGCGUGGCg- -3' miRNA: 3'- -CCCG---GCGACCGCga----UG-GCGUACCGgu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 16327 | 0.66 | 0.412248 |
Target: 5'- cGGGUCGUUGGgauuucCGCcgAagGCGUGGCCGu -3' miRNA: 3'- -CCCGGCGACC------GCGa-UggCGUACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 62623 | 0.66 | 0.403522 |
Target: 5'- cGGuGUCGgaGGCgGCUGCCagggugccCAUGGCCu -3' miRNA: 3'- -CC-CGGCgaCCG-CGAUGGc-------GUACCGGu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 70932 | 0.66 | 0.398342 |
Target: 5'- cGGCCGCugagcguggagaccgUGacacggugcGCGCUACCGCugaGGCUAu -3' miRNA: 3'- cCCGGCG---------------AC---------CGCGAUGGCGua-CCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 37160 | 0.66 | 0.398342 |
Target: 5'- aGGCCGCUGGgaugaGCcACCccaucaccgacccugGCgAUGGCCGg -3' miRNA: 3'- cCCGGCGACCg----CGaUGG---------------CG-UACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 30152 | 0.67 | 0.386423 |
Target: 5'- cGGGCUcagGC-GGCGCgGCCGCggaGUGGaCCu -3' miRNA: 3'- -CCCGG---CGaCCGCGaUGGCG---UACC-GGu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 9523 | 0.69 | 0.261267 |
Target: 5'- cGGCCuGCUGGUG-UACCGCcccucGGCCu -3' miRNA: 3'- cCCGG-CGACCGCgAUGGCGua---CCGGu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 49420 | 0.67 | 0.386423 |
Target: 5'- aGGCCGaCUGGaauCGggACUGCAccGGCCAg -3' miRNA: 3'- cCCGGC-GACC---GCgaUGGCGUa-CCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 45592 | 0.67 | 0.361689 |
Target: 5'- aGGUgGCcGGUGCcuccuCCGCGUcGGCCAa -3' miRNA: 3'- cCCGgCGaCCGCGau---GGCGUA-CCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 16026 | 0.68 | 0.33046 |
Target: 5'- cGGCUGCUGGCaagggcgccgccGCUgucACCGCAUccGCCGc -3' miRNA: 3'- cCCGGCGACCG------------CGA---UGGCGUAc-CGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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