miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 5' -62.5 NC_004681.1 + 41138 0.67 0.345822
Target:  5'- aGGGCCGUcgcaugggUGGCuaccCUGCCGCGauggaUGGCa- -3'
miRNA:   3'- -CCCGGCG--------ACCGc---GAUGGCGU-----ACCGgu -5'
18524 5' -62.5 NC_004681.1 + 67132 0.68 0.331216
Target:  5'- uGG-UGCUGGagauggugccagugaGCUugCGCAUGGCCu -3'
miRNA:   3'- cCCgGCGACCg--------------CGAugGCGUACCGGu -5'
18524 5' -62.5 NC_004681.1 + 16026 0.68 0.33046
Target:  5'- cGGCUGCUGGCaagggcgccgccGCUgucACCGCAUccGCCGc -3'
miRNA:   3'- cCCGGCGACCG------------CGA---UGGCGUAc-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 9626 0.68 0.33046
Target:  5'- aGGCCGaggGGCGgUACaccaGCA-GGCCGa -3'
miRNA:   3'- cCCGGCga-CCGCgAUGg---CGUaCCGGU- -5'
18524 5' -62.5 NC_004681.1 + 52314 0.68 0.32297
Target:  5'- aGGUCGgggaUGGCGggGCCGUucuUGGCCGu -3'
miRNA:   3'- cCCGGCg---ACCGCgaUGGCGu--ACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 16196 0.68 0.32297
Target:  5'- uGGCgGCUGuGCGC-GCCGCgGUGGUg- -3'
miRNA:   3'- cCCGgCGAC-CGCGaUGGCG-UACCGgu -5'
18524 5' -62.5 NC_004681.1 + 49037 0.68 0.318537
Target:  5'- uGGCUGCccgguucuucuugcGGCGCUGCUGgAUGGUCu -3'
miRNA:   3'- cCCGGCGa-------------CCGCGAUGGCgUACCGGu -5'
18524 5' -62.5 NC_004681.1 + 22908 0.68 0.315607
Target:  5'- gGGGUCGCcccGGCGaUGCCGUAguagcGGCCc -3'
miRNA:   3'- -CCCGGCGa--CCGCgAUGGCGUa----CCGGu -5'
18524 5' -62.5 NC_004681.1 + 18155 0.68 0.315607
Target:  5'- cGGGacaaucggaagaCCGC-GGCGCUGCCGUGaGGCg- -3'
miRNA:   3'- -CCC------------GGCGaCCGCGAUGGCGUaCCGgu -5'
18524 5' -62.5 NC_004681.1 + 38898 0.68 0.315607
Target:  5'- aGGCCagccuGCUGGCGUgggucaAUC-CAUGGCCAg -3'
miRNA:   3'- cCCGG-----CGACCGCGa-----UGGcGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 12066 0.68 0.308372
Target:  5'- cGGCCGCaUGGaCGagGCCGaguaCGUGGCCGa -3'
miRNA:   3'- cCCGGCG-ACC-GCgaUGGC----GUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 3129 0.68 0.301264
Target:  5'- uGGcGCCGCgGGUGCgggcauUGCCGC-UGGCg- -3'
miRNA:   3'- -CC-CGGCGaCCGCG------AUGGCGuACCGgu -5'
18524 5' -62.5 NC_004681.1 + 20009 0.68 0.299156
Target:  5'- cGGGCacUUGGCGCUgucgaACCGCggagaccaggacggGUGGCCGc -3'
miRNA:   3'- -CCCGgcGACCGCGA-----UGGCG--------------UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 46939 0.68 0.294283
Target:  5'- cGGGgUGCcggGGCgGUUGCCGCggGGCUg -3'
miRNA:   3'- -CCCgGCGa--CCG-CGAUGGCGuaCCGGu -5'
18524 5' -62.5 NC_004681.1 + 3403 0.68 0.294282
Target:  5'- uGGCCGC-GGCGC--CCGCGcGaGCCAc -3'
miRNA:   3'- cCCGGCGaCCGCGauGGCGUaC-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 15756 0.69 0.274098
Target:  5'- -cGCCGUUGGCGU--CUGCGUGaGCCu -3'
miRNA:   3'- ccCGGCGACCGCGauGGCGUAC-CGGu -5'
18524 5' -62.5 NC_004681.1 + 32337 0.69 0.267621
Target:  5'- cGGGCUagacacgagGCc-GCGCUGCCGCugcgAUGGCCu -3'
miRNA:   3'- -CCCGG---------CGacCGCGAUGGCG----UACCGGu -5'
18524 5' -62.5 NC_004681.1 + 42364 0.69 0.267621
Target:  5'- aGGCCGUgaaGGCGCcuuCCGCGggcgGGaCCAg -3'
miRNA:   3'- cCCGGCGa--CCGCGau-GGCGUa---CC-GGU- -5'
18524 5' -62.5 NC_004681.1 + 2444 0.69 0.267621
Target:  5'- uGGGCCuuGUUGGCGCgcgGCaCGCAgaagugGGCg- -3'
miRNA:   3'- -CCCGG--CGACCGCGa--UG-GCGUa-----CCGgu -5'
18524 5' -62.5 NC_004681.1 + 52965 0.69 0.261267
Target:  5'- cGGGCaCGCgGGCag-GCCG-AUGGCCAg -3'
miRNA:   3'- -CCCG-GCGaCCGcgaUGGCgUACCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.