Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18525 | 5' | -53.1 | NC_004681.1 | + | 68457 | 1.12 | 0.001627 |
Target: 5'- gCCGAAGAAGGCUGACCUCGUCGUGACg -3' miRNA: 3'- -GGCUUCUUCCGACUGGAGCAGCACUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 21309 | 0.83 | 0.140533 |
Target: 5'- gCUGAAGAAGGC-GACCaUCGUCGUGgACg -3' miRNA: 3'- -GGCUUCUUCCGaCUGG-AGCAGCAC-UG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 5774 | 0.73 | 0.533302 |
Target: 5'- uUGAAGAAgcggaucGGCacGACCUCGUCGUcGGCg -3' miRNA: 3'- gGCUUCUU-------CCGa-CUGGAGCAGCA-CUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 52851 | 0.71 | 0.64152 |
Target: 5'- uCCGGgcGGAAGGCUGGCCaUCGgccugcccgCGUGcCc -3' miRNA: 3'- -GGCU--UCUUCCGACUGG-AGCa--------GCACuG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 38042 | 0.71 | 0.651257 |
Target: 5'- gCCGAGGGccauccggccucgGGGCUGA-CUCGcUCGcUGACg -3' miRNA: 3'- -GGCUUCU-------------UCCGACUgGAGC-AGC-ACUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 2550 | 0.7 | 0.705956 |
Target: 5'- gCCGAAGAguGGGCgGACgaUGUCGUcGCg -3' miRNA: 3'- -GGCUUCU--UCCGaCUGgaGCAGCAcUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 27437 | 0.7 | 0.726988 |
Target: 5'- cUCGAAuGggGGCggugUGACCUCGaugUCGUG-Cg -3' miRNA: 3'- -GGCUU-CuuCCG----ACUGGAGC---AGCACuG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 67295 | 0.7 | 0.737373 |
Target: 5'- aCGggGAGGGC--AUCUCG-CGUGAg -3' miRNA: 3'- gGCuuCUUCCGacUGGAGCaGCACUg -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 55306 | 0.7 | 0.737373 |
Target: 5'- aCC-AGGAcaAGGCUGAgUUCGUCGccaUGGCg -3' miRNA: 3'- -GGcUUCU--UCCGACUgGAGCAGC---ACUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 67658 | 0.69 | 0.787538 |
Target: 5'- gCGuGGAGGGCUGcUCUCGgggauguaGUGACg -3' miRNA: 3'- gGCuUCUUCCGACuGGAGCag------CACUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 58928 | 0.68 | 0.806584 |
Target: 5'- gUCGAAGAGGuuGUUGGCCUCuGUCcggGUGAg -3' miRNA: 3'- -GGCUUCUUC--CGACUGGAG-CAG---CACUg -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 49512 | 0.68 | 0.815846 |
Target: 5'- cCCGAuuccAGucGGCcuUGACUUCGUCcucgGUGACc -3' miRNA: 3'- -GGCU----UCuuCCG--ACUGGAGCAG----CACUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 19407 | 0.68 | 0.815846 |
Target: 5'- aCCGAAGGc-GCUGACCgaGUCGaagGACu -3' miRNA: 3'- -GGCUUCUucCGACUGGagCAGCa--CUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 29529 | 0.68 | 0.824922 |
Target: 5'- gCCGuuGcccGAGGC-GACCUCGcCaGUGACg -3' miRNA: 3'- -GGCuuC---UUCCGaCUGGAGCaG-CACUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 37714 | 0.68 | 0.824922 |
Target: 5'- gCUGGAGAAGGUgcucucccgGgucuucagguacGCCUCGUaCGUGGCc -3' miRNA: 3'- -GGCUUCUUCCGa--------C------------UGGAGCA-GCACUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 53682 | 0.68 | 0.833801 |
Target: 5'- aCUGcGGGAGGUggagGACCUUGcCgGUGGCg -3' miRNA: 3'- -GGCuUCUUCCGa---CUGGAGCaG-CACUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 23706 | 0.68 | 0.837296 |
Target: 5'- aCCaGGAGGAGGCgGAuggccacccccgugcCCUCGuagcccUCGUGGCu -3' miRNA: 3'- -GG-CUUCUUCCGaCU---------------GGAGC------AGCACUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 43904 | 0.67 | 0.867183 |
Target: 5'- gCGggGGuGGGCgcgGACCUCGUgGaaggaGGCa -3' miRNA: 3'- gGCuuCU-UCCGa--CUGGAGCAgCa----CUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 18408 | 0.67 | 0.867183 |
Target: 5'- aCGAaccGGAAGGCugcUGACCgccaGUCGagGACu -3' miRNA: 3'- gGCU---UCUUCCG---ACUGGag--CAGCa-CUG- -5' |
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18525 | 5' | -53.1 | NC_004681.1 | + | 56508 | 0.66 | 0.889765 |
Target: 5'- gCCaGAAGAAguGGCUGgagcGCCUCGUCaaccgcuggGUGAa -3' miRNA: 3'- -GG-CUUCUU--CCGAC----UGGAGCAG---------CACUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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