miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18526 3' -61.3 NC_004681.1 + 11043 0.66 0.500481
Target:  5'- gCGUgUGGGUGCgggaGUGCgGGUGGg--- -3'
miRNA:   3'- -GCGgACCCGCGg---UACGgCCACCaaga -5'
18526 3' -61.3 NC_004681.1 + 51700 0.66 0.499501
Target:  5'- aCGagCUGGGCgaaGCCGagcccguUGCCGGUGGguugCUc -3'
miRNA:   3'- -GCg-GACCCG---CGGU-------ACGGCCACCaa--GA- -5'
18526 3' -61.3 NC_004681.1 + 22829 0.66 0.49072
Target:  5'- -cCCgaguGGCgGCCGUGCCGGUG-UUCUg -3'
miRNA:   3'- gcGGac--CCG-CGGUACGGCCACcAAGA- -5'
18526 3' -61.3 NC_004681.1 + 24062 0.66 0.49072
Target:  5'- -uCCUGGaCGCCAuUGUCGGUGGcgCc -3'
miRNA:   3'- gcGGACCcGCGGU-ACGGCCACCaaGa -5'
18526 3' -61.3 NC_004681.1 + 30672 0.66 0.481048
Target:  5'- cCGCCUuGGCGCUugcGCCGGUaGGa--- -3'
miRNA:   3'- -GCGGAcCCGCGGua-CGGCCA-CCaaga -5'
18526 3' -61.3 NC_004681.1 + 27314 0.66 0.461988
Target:  5'- gGCCaggagGGGCGCgAcGCCGGUGuacUUCg -3'
miRNA:   3'- gCGGa----CCCGCGgUaCGGCCACc--AAGa -5'
18526 3' -61.3 NC_004681.1 + 17944 0.67 0.412624
Target:  5'- aCGCCgGGGCGCCcggguuggugagGCCGGUGc---- -3'
miRNA:   3'- -GCGGaCCCGCGGua----------CGGCCACcaaga -5'
18526 3' -61.3 NC_004681.1 + 6361 0.67 0.407342
Target:  5'- aGCCcuUGGGCGCCAcGCCcGaUGGcgCUg -3'
miRNA:   3'- gCGG--ACCCGCGGUaCGGcC-ACCaaGA- -5'
18526 3' -61.3 NC_004681.1 + 21518 0.68 0.380741
Target:  5'- aGCCaUGGGCGCUAUucguugaccacccGCgCGGUGGccUCa -3'
miRNA:   3'- gCGG-ACCCGCGGUA-------------CG-GCCACCa-AGa -5'
18526 3' -61.3 NC_004681.1 + 27682 0.73 0.167851
Target:  5'- gCGCCUGuGGUGCC-UGCCGGUaccGGcUCg -3'
miRNA:   3'- -GCGGAC-CCGCGGuACGGCCA---CCaAGa -5'
18526 3' -61.3 NC_004681.1 + 18201 0.74 0.159401
Target:  5'- gGCCggGGGCGCCgAUGCCGG-GGa--- -3'
miRNA:   3'- gCGGa-CCCGCGG-UACGGCCaCCaaga -5'
18526 3' -61.3 NC_004681.1 + 68523 1.07 0.000527
Target:  5'- aCGCCUGGGCGCCAUGCCGGUGGUUCUc -3'
miRNA:   3'- -GCGGACCCGCGGUACGGCCACCAAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.