Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18526 | 5' | -55.2 | NC_004681.1 | + | 68558 | 1.13 | 0.000805 |
Target: 5'- gGCAGGACUACUUGCUGGCACGCCUGGa -3' miRNA: 3'- -CGUCCUGAUGAACGACCGUGCGGACC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 40020 | 0.69 | 0.593361 |
Target: 5'- gGCGGGcgaaguacucCUGCgcagGCUGGcCGCGCgCUGGg -3' miRNA: 3'- -CGUCCu---------GAUGaa--CGACC-GUGCG-GACC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 48313 | 0.69 | 0.636508 |
Target: 5'- gGCgAGGGCcaGCUUGUaGGCGCGCUucuUGGc -3' miRNA: 3'- -CG-UCCUGa-UGAACGaCCGUGCGG---ACC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 16393 | 0.68 | 0.679588 |
Target: 5'- cGCGGGGaUGCccucggggaGCUGGUagcccuGCGCCUGGu -3' miRNA: 3'- -CGUCCUgAUGaa-------CGACCG------UGCGGACC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 21394 | 0.68 | 0.679588 |
Target: 5'- -aAGGACgucguggACUUGCaGGagaGCGuCCUGGg -3' miRNA: 3'- cgUCCUGa------UGAACGaCCg--UGC-GGACC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 14489 | 0.68 | 0.700908 |
Target: 5'- aGCAGGGCgcGCUgguggccggUGCUGGCGCgaGCaaGGu -3' miRNA: 3'- -CGUCCUGa-UGA---------ACGACCGUG--CGgaCC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 47486 | 0.68 | 0.700908 |
Target: 5'- cGCAGGACcGCgucGCcgUGGCGCGUUggcGGg -3' miRNA: 3'- -CGUCCUGaUGaa-CG--ACCGUGCGGa--CC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 53355 | 0.67 | 0.711476 |
Target: 5'- -gAGGGCUAUacccUUGGC-CGCCUGGu -3' miRNA: 3'- cgUCCUGAUGaac-GACCGuGCGGACC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 39507 | 0.67 | 0.72197 |
Target: 5'- gGCGGGACUcauggcccaaGCggGCUGGCAauCCcGGc -3' miRNA: 3'- -CGUCCUGA----------UGaaCGACCGUgcGGaCC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 13884 | 0.67 | 0.742687 |
Target: 5'- cCGGGACgacaGCUUGggGGCgccguccuuGCGCUUGGu -3' miRNA: 3'- cGUCCUGa---UGAACgaCCG---------UGCGGACC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 22742 | 0.67 | 0.742687 |
Target: 5'- cGUAGGcgauCUGCUUGCgcgcGGCGCuGCCcgcGGu -3' miRNA: 3'- -CGUCCu---GAUGAACGa---CCGUG-CGGa--CC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 8226 | 0.67 | 0.75289 |
Target: 5'- --uGGACUuuGCgaGCUGGCgGC-CCUGGg -3' miRNA: 3'- cguCCUGA--UGaaCGACCG-UGcGGACC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 3151 | 0.67 | 0.75289 |
Target: 5'- cGCAGGACUGCcacCaGGCccuugGCGCCgcgGGu -3' miRNA: 3'- -CGUCCUGAUGaacGaCCG-----UGCGGa--CC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 17288 | 0.67 | 0.762975 |
Target: 5'- cCGGaGACgACgcccUGCUGGCGCGCgUGc -3' miRNA: 3'- cGUC-CUGaUGa---ACGACCGUGCGgACc -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 69999 | 0.66 | 0.772929 |
Target: 5'- uGCGGGuaGCUAUgcccGCUGGCuuucGCGUCUcGGa -3' miRNA: 3'- -CGUCC--UGAUGaa--CGACCG----UGCGGA-CC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 46909 | 0.66 | 0.772929 |
Target: 5'- cGCGGcGACUGgUUcGCUGGCACuaCCUacGGu -3' miRNA: 3'- -CGUC-CUGAUgAA-CGACCGUGc-GGA--CC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 11352 | 0.66 | 0.782744 |
Target: 5'- gGCaAGGACguugAUgagGCUGGCGa-CCUGGc -3' miRNA: 3'- -CG-UCCUGa---UGaa-CGACCGUgcGGACC- -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 3109 | 0.66 | 0.782744 |
Target: 5'- cGCAGGACUACcUGaucggaucGCGCGCCc-- -3' miRNA: 3'- -CGUCCUGAUGaACgac-----CGUGCGGacc -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 24055 | 0.66 | 0.792408 |
Target: 5'- cCAGGuCgGCgaacgUGUUGGCACGCCcGa -3' miRNA: 3'- cGUCCuGaUGa----ACGACCGUGCGGaCc -5' |
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18526 | 5' | -55.2 | NC_004681.1 | + | 29585 | 0.66 | 0.792408 |
Target: 5'- aGguGGGCgGCaacgUGCUGGCcuACGCuCUGc -3' miRNA: 3'- -CguCCUGaUGa---ACGACCG--UGCG-GACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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