miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18527 3' -57.6 NC_004681.1 + 36789 0.68 0.585727
Target:  5'- uCCGUccccgauGAGGAGCccgUGGUGAugcugcucucGGACCCc -3'
miRNA:   3'- cGGCGu------CUCCUCG---ACCACUu---------CCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 59598 0.68 0.575242
Target:  5'- aGgUGCAGAGGGGUggggGGUuccuuGGAGGAuugcaCCCg -3'
miRNA:   3'- -CgGCGUCUCCUCGa---CCA-----CUUCCU-----GGG- -5'
18527 3' -57.6 NC_004681.1 + 3063 0.68 0.558559
Target:  5'- gGCCGCGaauaucucGGGGuccucGCUGGUGAAcucggcgcgcguggcGGugCCg -3'
miRNA:   3'- -CGGCGU--------CUCCu----CGACCACUU---------------CCugGG- -5'
18527 3' -57.6 NC_004681.1 + 41257 0.68 0.554409
Target:  5'- gGCCGCGGAGGuGCUu-----GGACUCa -3'
miRNA:   3'- -CGGCGUCUCCuCGAccacuuCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 16396 0.68 0.533804
Target:  5'- gGCCGCGGggaugcccucgGGGAGCUGGUa----GCCCu -3'
miRNA:   3'- -CGGCGUC-----------UCCUCGACCAcuuccUGGG- -5'
18527 3' -57.6 NC_004681.1 + 59306 0.68 0.533804
Target:  5'- uGCCGUuccGGGGAcucCUGcGUGGccAGGACCCc -3'
miRNA:   3'- -CGGCGu--CUCCUc--GAC-CACU--UCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 43911 0.69 0.523603
Target:  5'- uGCCGUAGcGGGGgUGGgcgcGGACCUc -3'
miRNA:   3'- -CGGCGUCuCCUCgACCacuuCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 40212 0.69 0.513478
Target:  5'- gGUCGUGGAGGAGCUugacGGUugcGcGGGAgCCa -3'
miRNA:   3'- -CGGCGUCUCCUCGA----CCA---CuUCCUgGG- -5'
18527 3' -57.6 NC_004681.1 + 44238 0.69 0.503433
Target:  5'- gGCCGguGAGGgccaggcccgcGGCcucgggGGUGAggcAGGugCCu -3'
miRNA:   3'- -CGGCguCUCC-----------UCGa-----CCACU---UCCugGG- -5'
18527 3' -57.6 NC_004681.1 + 41048 0.69 0.483609
Target:  5'- uGCUGCAGAugcuGCUGGagGAGacGGACCCu -3'
miRNA:   3'- -CGGCGUCUccu-CGACCa-CUU--CCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 28602 0.7 0.464166
Target:  5'- aCCGCGGGGGuGCccggGGUGAGuGuGAgCCCa -3'
miRNA:   3'- cGGCGUCUCCuCGa---CCACUU-C-CU-GGG- -5'
18527 3' -57.6 NC_004681.1 + 7189 0.7 0.4546
Target:  5'- uGCCaGCGuuGAGGAGUUcccGGUgGggGGugCCg -3'
miRNA:   3'- -CGG-CGU--CUCCUCGA---CCA-CuuCCugGG- -5'
18527 3' -57.6 NC_004681.1 + 67467 0.7 0.435793
Target:  5'- aGCCauCAGGGGAGCgcGGUGAgcGGGACg- -3'
miRNA:   3'- -CGGc-GUCUCCUCGa-CCACU--UCCUGgg -5'
18527 3' -57.6 NC_004681.1 + 24976 0.7 0.427477
Target:  5'- cGCCGCccucgccauuGCUGGUGAGGGAgCCu -3'
miRNA:   3'- -CGGCGucuccu----CGACCACUUCCUgGG- -5'
18527 3' -57.6 NC_004681.1 + 1138 0.71 0.417443
Target:  5'- gGCCGCgaGGGGGAGUccaaUGGguaaacgcGGACCCa -3'
miRNA:   3'- -CGGCG--UCUCCUCG----ACCacuu----CCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 31209 0.71 0.372857
Target:  5'- cGCCGCuuucGAGGAcaucgcaGCgUGGcUGggGGACCg -3'
miRNA:   3'- -CGGCGu---CUCCU-------CG-ACC-ACuuCCUGGg -5'
18527 3' -57.6 NC_004681.1 + 60123 0.72 0.357095
Target:  5'- aGCCGCcgaAGGcGAGCaGGUGcccaccgggcuuGAGGACCCg -3'
miRNA:   3'- -CGGCG---UCUcCUCGaCCAC------------UUCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 62523 0.72 0.348989
Target:  5'- gGCgGCGGAGaGGGC-GGUGucGGcGCCCa -3'
miRNA:   3'- -CGgCGUCUC-CUCGaCCACuuCC-UGGG- -5'
18527 3' -57.6 NC_004681.1 + 48850 0.72 0.325465
Target:  5'- cGCCGUccuGGAGGuGCUGGaccaAGGaGACCCa -3'
miRNA:   3'- -CGGCG---UCUCCuCGACCac--UUC-CUGGG- -5'
18527 3' -57.6 NC_004681.1 + 36134 0.73 0.295965
Target:  5'- aCCGgGGAGGaAGCgugagcgacccGGUGAAGGuACCCa -3'
miRNA:   3'- cGGCgUCUCC-UCGa----------CCACUUCC-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.