miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18528 3' -58.3 NC_004681.1 + 69429 1.1 0.000651
Target:  5'- cAUGUCGGCCUCCGUGGACAUCACCCCg -3'
miRNA:   3'- -UACAGCCGGAGGCACCUGUAGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 44995 0.81 0.079794
Target:  5'- --cUCGGCCU-CGUGGGCGUCGCCCg -3'
miRNA:   3'- uacAGCCGGAgGCACCUGUAGUGGGg -5'
18528 3' -58.3 NC_004681.1 + 29532 0.78 0.126668
Target:  5'- gGUGUggaCGGCUUCCGgcucGGGCAUCGCCgCCa -3'
miRNA:   3'- -UACA---GCCGGAGGCa---CCUGUAGUGG-GG- -5'
18528 3' -58.3 NC_004681.1 + 17892 0.78 0.137236
Target:  5'- gAUGUCGGCCUgCGUGGGCugcggaACCuCCa -3'
miRNA:   3'- -UACAGCCGGAgGCACCUGuag---UGG-GG- -5'
18528 3' -58.3 NC_004681.1 + 15994 0.76 0.173956
Target:  5'- gAUGcUGGCCUCCGcguaucUGGGCAUCGUCCCg -3'
miRNA:   3'- -UACaGCCGGAGGC------ACCUGUAGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 62086 0.74 0.242329
Target:  5'- cAUGgCGGCCUCCaUGGGCggCAUCCUg -3'
miRNA:   3'- -UACaGCCGGAGGcACCUGuaGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 40145 0.73 0.267473
Target:  5'- -cGUCGGCCUgCG-GGAUcggcuUCGCCCUg -3'
miRNA:   3'- uaCAGCCGGAgGCaCCUGu----AGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 25696 0.73 0.287685
Target:  5'- -cGUCGGCCUguaCGU-GACAUCGCCgCa -3'
miRNA:   3'- uaCAGCCGGAg--GCAcCUGUAGUGGgG- -5'
18528 3' -58.3 NC_004681.1 + 50389 0.73 0.287685
Target:  5'- -cGUCGGCCg-CGgGGACGUgGCCCUu -3'
miRNA:   3'- uaCAGCCGGagGCaCCUGUAgUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 47987 0.72 0.301815
Target:  5'- --aUCGGCCUgC--GGAUGUCACCCCa -3'
miRNA:   3'- uacAGCCGGAgGcaCCUGUAGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 437 0.72 0.301815
Target:  5'- -cGagGGCCUCCGcUGGGCGUCcaACCUg -3'
miRNA:   3'- uaCagCCGGAGGC-ACCUGUAG--UGGGg -5'
18528 3' -58.3 NC_004681.1 + 6904 0.72 0.324003
Target:  5'- cAUGUCcguGGCCaccaCCGUGGGCucguucCACCCCu -3'
miRNA:   3'- -UACAG---CCGGa---GGCACCUGua----GUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 9169 0.71 0.339458
Target:  5'- -cGUCuucgacGCCUUCGUGGACAUCcagcugACCCUg -3'
miRNA:   3'- uaCAGc-----CGGAGGCACCUGUAG------UGGGG- -5'
18528 3' -58.3 NC_004681.1 + 41942 0.71 0.355441
Target:  5'- -gGUCGG-CUCCGcGGAgAUCGgCCCg -3'
miRNA:   3'- uaCAGCCgGAGGCaCCUgUAGUgGGG- -5'
18528 3' -58.3 NC_004681.1 + 6411 0.69 0.433678
Target:  5'- -cGUCGGCCUUCG-GGuCAUCcgACCgCg -3'
miRNA:   3'- uaCAGCCGGAGGCaCCuGUAG--UGGgG- -5'
18528 3' -58.3 NC_004681.1 + 33011 0.69 0.442974
Target:  5'- -aG-CGGCCUgCCGaccucgGGACAuggcaUCGCCCCc -3'
miRNA:   3'- uaCaGCCGGA-GGCa-----CCUGU-----AGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 56887 0.69 0.449548
Target:  5'- gAUGUgGGCgaCCcgguagacguacagGUGGGCcUCGCCCCg -3'
miRNA:   3'- -UACAgCCGgaGG--------------CACCUGuAGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 66058 0.69 0.481236
Target:  5'- --cUCGGCCUUCGUgccguagcGGAUGUCAUgCCa -3'
miRNA:   3'- uacAGCCGGAGGCA--------CCUGUAGUGgGG- -5'
18528 3' -58.3 NC_004681.1 + 58918 0.68 0.500961
Target:  5'- uUGUUGGCCUCUGUccgGGugAg-GCCCa -3'
miRNA:   3'- uACAGCCGGAGGCA---CCugUagUGGGg -5'
18528 3' -58.3 NC_004681.1 + 45547 0.68 0.500961
Target:  5'- -aGUCgGGCaagaagcggCUCCuggagcagGUGGACAUCGCCCg -3'
miRNA:   3'- uaCAG-CCG---------GAGG--------CACCUGUAGUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.