miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18528 5' -56.2 NC_004681.1 + 54731 0.66 0.769951
Target:  5'- -aGGGugagcgGCCgUUCACGGGGAuaUGAg -3'
miRNA:   3'- gaCCUua----CGGgAGGUGCCCCUcaACU- -5'
18528 5' -56.2 NC_004681.1 + 37852 0.66 0.760027
Target:  5'- gUGGGAUGCCaUCCAUcaGGAGguggUGAa -3'
miRNA:   3'- gACCUUACGGgAGGUGccCCUCa---ACU- -5'
18528 5' -56.2 NC_004681.1 + 50409 0.66 0.716071
Target:  5'- -gGGggUGCCCaUgaguucagcgucggCCGCGGGGAcgUGGc -3'
miRNA:   3'- gaCCuuACGGG-A--------------GGUGCCCCUcaACU- -5'
18528 5' -56.2 NC_004681.1 + 22507 0.67 0.708756
Target:  5'- -cGGAGgguUGCCgUCCGCGGccGGGG-UGAc -3'
miRNA:   3'- gaCCUU---ACGGgAGGUGCC--CCUCaACU- -5'
18528 5' -56.2 NC_004681.1 + 28597 0.67 0.699299
Target:  5'- -gGGggUGCCCggggugagugugagcCCAgcccCGGGcGGGUUGAu -3'
miRNA:   3'- gaCCuuACGGGa--------------GGU----GCCC-CUCAACU- -5'
18528 5' -56.2 NC_004681.1 + 12013 0.67 0.698245
Target:  5'- -aGGggUGUUCUCCGCGGcGGuGa--- -3'
miRNA:   3'- gaCCuuACGGGAGGUGCC-CCuCaacu -5'
18528 5' -56.2 NC_004681.1 + 66640 0.67 0.666388
Target:  5'- uCUGGAcgGCgCUCUgggcauCGGGGGGUa-- -3'
miRNA:   3'- -GACCUuaCGgGAGGu-----GCCCCUCAacu -5'
18528 5' -56.2 NC_004681.1 + 17965 0.68 0.623529
Target:  5'- uCUGGAG-GUCCUCCAgagugaacgcCGGGGcgcccgGGUUGGu -3'
miRNA:   3'- -GACCUUaCGGGAGGU----------GCCCC------UCAACU- -5'
18528 5' -56.2 NC_004681.1 + 28531 0.68 0.606385
Target:  5'- -gGGAGUGCCCcacgcgagcuccaucUCCGCGGGagccGGGgUGAc -3'
miRNA:   3'- gaCCUUACGGG---------------AGGUGCCC----CUCaACU- -5'
18528 5' -56.2 NC_004681.1 + 9120 0.69 0.59036
Target:  5'- uUGG--UGCCgUCCGCGGGGAacuucacGUUGc -3'
miRNA:   3'- gACCuuACGGgAGGUGCCCCU-------CAACu -5'
18528 5' -56.2 NC_004681.1 + 16390 0.7 0.487616
Target:  5'- -gGGGAUGCCCU---CGGGGAGcUGGu -3'
miRNA:   3'- gaCCUUACGGGAgguGCCCCUCaACU- -5'
18528 5' -56.2 NC_004681.1 + 69464 1.09 0.001193
Target:  5'- aCUGGAAUGCCCUCCACGGGGAGUUGAc -3'
miRNA:   3'- -GACCUUACGGGAGGUGCCCCUCAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.