Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 61864 | 0.69 | 0.487616 |
Target: 5'- -aGCuccUGGCCgauggCGGCcgcggucuGGUGGCGCGCGa -3' miRNA: 3'- agCGu--AUCGGa----GUCG--------CCAUCGCGCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 69898 | 0.69 | 0.487616 |
Target: 5'- -gGCAcGGUCUCAGCuaaccaugGGUAcguGCGCGCGg -3' miRNA: 3'- agCGUaUCGGAGUCG--------CCAU---CGCGCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 57437 | 0.69 | 0.487616 |
Target: 5'- cUCGgAUGGCCaaguugUCuGGCGuUAGCGCGCGg -3' miRNA: 3'- -AGCgUAUCGG------AG-UCGCcAUCGCGCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 27921 | 0.69 | 0.473725 |
Target: 5'- aCGCGgGGCCUCGGCGGcacggcacggcuGUGgGCAu -3' miRNA: 3'- aGCGUaUCGGAGUCGCCau----------CGCgCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 37660 | 0.69 | 0.458098 |
Target: 5'- cUGCGgGGCCUCgccAGCGGccGCGCGUc -3' miRNA: 3'- aGCGUaUCGGAG---UCGCCauCGCGCGu -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 13681 | 0.69 | 0.458097 |
Target: 5'- -gGCGUGGCCgcccGCGGccuugaAGCGCGCGu -3' miRNA: 3'- agCGUAUCGGagu-CGCCa-----UCGCGCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 67104 | 0.69 | 0.458097 |
Target: 5'- gCGCAUGGCCU--GCGacaugaGGCGCGCGu -3' miRNA: 3'- aGCGUAUCGGAguCGCca----UCGCGCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 57902 | 0.69 | 0.438957 |
Target: 5'- uUCGCca--CCUCGGCGGcgcGGCGCGUg -3' miRNA: 3'- -AGCGuaucGGAGUCGCCa--UCGCGCGu -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 50487 | 0.71 | 0.384419 |
Target: 5'- gUCGcCGUAGUCguggUAGCGGUAGC-CGCc -3' miRNA: 3'- -AGC-GUAUCGGa---GUCGCCAUCGcGCGu -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 30970 | 0.72 | 0.326726 |
Target: 5'- gUCGCGgGGCUcCAGCGGgucGGCGgGCGg -3' miRNA: 3'- -AGCGUaUCGGaGUCGCCa--UCGCgCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 6196 | 0.72 | 0.326726 |
Target: 5'- aUCGcCAUGGUgUC-GCGGUAgaacGCGCGCAu -3' miRNA: 3'- -AGC-GUAUCGgAGuCGCCAU----CGCGCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 4225 | 0.73 | 0.289602 |
Target: 5'- gUUGCG-GGCCUCAGCGGccuGCuuGCGCAu -3' miRNA: 3'- -AGCGUaUCGGAGUCGCCau-CG--CGCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 38905 | 0.78 | 0.122449 |
Target: 5'- cCGgAUGGUCUCGGCGGacuuGCGCGCGg -3' miRNA: 3'- aGCgUAUCGGAGUCGCCau--CGCGCGU- -5' |
|||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 70801 | 1.08 | 0.000841 |
Target: 5'- gUCGCAUAGCCUCAGCGGUAGCGCGCAc -3' miRNA: 3'- -AGCGUAUCGGAGUCGCCAUCGCGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home