Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18530 | 5' | -61 | NC_004681.1 | + | 17895 | 0.68 | 0.381948 |
Target: 5'- aUUCCugGg-CGGCGGCgGCGAGgGUc -3' miRNA: 3'- aGAGGugCgaGUCGCCGgCGCUCgUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 61758 | 0.68 | 0.373513 |
Target: 5'- cCUCCGCGg-CGGCGGCUucuGCGcGCAg -3' miRNA: 3'- aGAGGUGCgaGUCGCCGG---CGCuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 22271 | 0.68 | 0.365206 |
Target: 5'- aCUCCGCGU--GGCGGC-GUGGGCGc -3' miRNA: 3'- aGAGGUGCGagUCGCCGgCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 20472 | 0.68 | 0.365206 |
Target: 5'- aCUCCGCuGCgaaAGUGGCC-CGAGUAg -3' miRNA: 3'- aGAGGUG-CGag-UCGCCGGcGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 47175 | 0.68 | 0.34106 |
Target: 5'- cCUCgACGCcaaGGUGGUgGCGGGCAa -3' miRNA: 3'- aGAGgUGCGag-UCGCCGgCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 9243 | 0.68 | 0.34106 |
Target: 5'- uUCUCCGCGauCUCcGCGGCgGuCGGGUAc -3' miRNA: 3'- -AGAGGUGC--GAGuCGCCGgC-GCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 62949 | 0.69 | 0.325615 |
Target: 5'- aUCUCCuucgGCggugguggCGGCGGCggCGCGAGCAg -3' miRNA: 3'- -AGAGGug--CGa-------GUCGCCG--GCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 17800 | 0.69 | 0.297009 |
Target: 5'- --cCCACGCaggccgacaucaacgCGGCGGCCGCGcaaGGCAc -3' miRNA: 3'- agaGGUGCGa--------------GUCGCCGGCGC---UCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 61863 | 0.7 | 0.281752 |
Target: 5'- gCUCCugGCcgaUGGCGGCCGCGgucugguGGCGc -3' miRNA: 3'- aGAGGugCGa--GUCGCCGGCGC-------UCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 10776 | 0.7 | 0.262598 |
Target: 5'- gUCUCC-CGCcuugCAcgcGaCGGCCGCGGGCAc -3' miRNA: 3'- -AGAGGuGCGa---GU---C-GCCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 70124 | 0.7 | 0.252492 |
Target: 5'- gCUCCACGCUgAGCuccgagacgcgaaaGCCaGCGGGCAUa -3' miRNA: 3'- aGAGGUGCGAgUCGc-------------CGG-CGCUCGUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 44580 | 0.72 | 0.209862 |
Target: 5'- aUCgccgCCGCGCUC-GCGGCCGCc-GCAc -3' miRNA: 3'- -AGa---GGUGCGAGuCGCCGGCGcuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 70941 | 0.72 | 0.184692 |
Target: 5'- ---gCAUGCUC-GCGGCCGCuGAGCGUg -3' miRNA: 3'- agagGUGCGAGuCGCCGGCG-CUCGUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 38778 | 0.74 | 0.138167 |
Target: 5'- aCUCCugGCUCAuggaacuGCgGGCCGCGcGCAa -3' miRNA: 3'- aGAGGugCGAGU-------CG-CCGGCGCuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 42349 | 0.75 | 0.126896 |
Target: 5'- cUUCCGCgggcgggaccagcaGCUCGGCGGCCGUGuGCGg -3' miRNA: 3'- aGAGGUG--------------CGAGUCGCCGGCGCuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 47204 | 0.76 | 0.100425 |
Target: 5'- uUCUCguCGCUCAGCGGCgGCG-GCu- -3' miRNA: 3'- -AGAGguGCGAGUCGCCGgCGCuCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 70838 | 0.95 | 0.003732 |
Target: 5'- gUCUCCACGCUCAGCGGCCGC-AGCAUg -3' miRNA: 3'- -AGAGGUGCGAGUCGCCGGCGcUCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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